#! /bin/bash
# BEGIN_ICS_COPYRIGHT8 ****************************************
#
# Copyright (c) 2015, Intel Corporation
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice,
# this list of conditions and the following disclaimer.
# * Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in the
# documentation and/or other materials provided with the distribution.
# * Neither the name of Intel Corporation nor the names of its contributors
# may be used to endorse or promote products derived from this software
# without specific prior written permission.
#
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# END_ICS_COPYRIGHT8 ****************************************
# [ICS VERSION STRING: unknown]
# initialize
# BASE PATH TO MPI EXECUTABLES: To use an alternate location,
# either edit this line or set MPICH_PREFIX in your environment.
# see iba_select_mpi for the set of default MPI selections
# default to MPI used for build
MPICH_PREFIX=
mpirunfile=
vfselectmethod=sid
vfname=
vfsid=
qname=
MPI_CMD_ARGS=
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MPICH_PREFIX/lib64/
LSB_DJOB_NUMPROC=3
# Usage - display usage syntax and exit
Usage()
{
echo "Usage: submit.openmpi.job [-p num_processes] [-V vf_select_method] [-s vf_sid] [-n vf_name] [-q queue_name] mpi_run_file [mpi_run_file args]"
echo " where vf_select_method is one of:"
echo " vf_name: Name of virtual fabric - use -n to define vf name"
echo " sid : ServiceId of virtual fabric - use -s option to define service id"
echo " where queue_name is a valid LSF queue name (use bqueues for a list)"
exit 2
}
# process opts and args
while getopts V:s:n:p:q: param
do
case $param in
V)
export vfselectmethod=$OPTARG;;
s)
export vfsid=$OPTARG;;
n)
export vfname=$OPTARG;;
p)
export LSB_DJOB_NUMPROC=$OPTARG;;
q)
export qname=$OPTARG;;
?)
Usage
esac
done
shift $(($OPTIND -1))
mpirunfile=$1
# validate args
if [ "$mpirunfile" = "" ]
then
echo "Must provide an mpi_run_file"
Usage
fi
if [ ! -f $mpirunfile ]
then
echo "mpi_run_file \"$mpirunfile\" does not exist"
Usage
fi
# get opagetvf_func definition
. /usr/bin/opagetvf_env
case $vfselectmethod in
vf_name)
opagetvf2_func "-d '$vfname'" OMPI_MCA_btl_openib_pkey OMPI_MCA_btl_openib_ib_service_level OMPI_MCA_btl_openib_mtu
if [ $? -ne 0 ]
then
echo "Failed to get environment variables for VF with Name \"$vfname\""
Usage
fi
export OMPI_MCA_mtl_psm_ib_pkey=$OMPI_MCA_btl_openib_pkey
export OMPI_MCA_mtl_psm_ib_service_level=$OMPI_MCA_btl_openib_ib_service_level
export PSM_MTU=$OMPI_MCA_btl_openib_mtu;;
sid)
opagetvf2_func "-S '$vfsid'" OMPI_MCA_btl_openib_pkey OMPI_MCA_btl_openib_ib_service_level OMPI_MCA_btl_openib_mtu
if [ $? -ne 0 ]
then
echo "Failed to get environment variables for VF with SID \"$vfsid\""
Usage
fi
export OMPI_MCA_mtl_psm_ib_pkey=$OMPI_MCA_btl_openib_pkey
export OMPI_MCA_mtl_psm_ib_service_level=$OMPI_MCA_btl_openib_ib_service_level
export PSM_MTU=$OMPI_MCA_btl_openib_mtu;;
*)
echo Unknown vfselectmethod $vfselectmethod
Usage;;
esac
if [ "$MPICH_PREFIX" = "" ]
then
. /usr/bin/iba_select_mpi
if ! valid_mpich_prefix
then
find_mpi $prefix/mpi/gcc/openmpi*
fi
fi
lsid -V 2>&1 | tee lsid.out > /dev/null
version=`cat lsid.out | grep LSF | awk -F" " '{print $4}' | cut -d"." -f 1`
if [ "$version" = "9" ] || [ "$version" = "8" ]
then
temp=
for arg in $MPI_CMD_ARGS
do
temp="$temp -x '$arg'"
done
MPI_CMD_ARGS="$temp"
# submit the job
echo "#! /bin/sh" > .run.openmpi
echo "#BSUB -n $LSB_DJOB_NUMPROC" >> .run.openmpi
echo "#BSUB -o %J.out" >> .run.openmpi
echo "#BSUB -e %J.err" >> .run.openmpi
if [ "$qname" != "" ]
then
echo "#BSUB -q $qname" >> .run.openmpi
fi
echo $MPICH_PREFIX/bin/mpirun -np $LSB_DJOB_NUMPROC -hostfile \$LSB_DJOB_HOSTFILE $MPI_CMD_ARGS $* >> .run.openmpi
bsub < .run.openmpi
rm .run.openmpi
else
# submit the job from stdin - user mpirun.lsf
if [ "$qname" != "" ]
then
qparam="#BSUB -q $qname"
else
qparam=""
fi
bsub -a openmpi << EOF
#BSUB -n $LSB_DJOB_NUMPROC
#BSUB -o %J.out
#BSUB -e %J.err
$qparam
mpirun.lsf $MPI_CMD_ARGS $*
EOF
fi
rm lsid.out
exit 0