#! /bin/bash # BEGIN_ICS_COPYRIGHT8 **************************************** # # Copyright (c) 2015, Intel Corporation # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # # * Redistributions of source code must retain the above copyright notice, # this list of conditions and the following disclaimer. # * Redistributions in binary form must reproduce the above copyright # notice, this list of conditions and the following disclaimer in the # documentation and/or other materials provided with the distribution. # * Neither the name of Intel Corporation nor the names of its contributors # may be used to endorse or promote products derived from this software # without specific prior written permission. # # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE # DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE # FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL # DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR # SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER # CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, # OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE # OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. # # END_ICS_COPYRIGHT8 **************************************** # [ICS VERSION STRING: unknown] # initialize # BASE PATH TO MPI EXECUTABLES: To use an alternate location, # either edit this line or set MPICH_PREFIX in your environment. # see iba_select_mpi for the set of default MPI selections # default to MPI used for build MPICH_PREFIX= mpirunfile= vfselectmethod=sid vfname= vfsid= qname= MPI_CMD_ARGS= LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MPICH_PREFIX/lib64/ LSB_DJOB_NUMPROC=3 # Usage - display usage syntax and exit Usage() { echo "Usage: submit.openmpi.job [-p num_processes] [-V vf_select_method] [-s vf_sid] [-n vf_name] [-q queue_name] mpi_run_file [mpi_run_file args]" echo " where vf_select_method is one of:" echo " vf_name: Name of virtual fabric - use -n to define vf name" echo " sid : ServiceId of virtual fabric - use -s option to define service id" echo " where queue_name is a valid LSF queue name (use bqueues for a list)" exit 2 } # process opts and args while getopts V:s:n:p:q: param do case $param in V) export vfselectmethod=$OPTARG;; s) export vfsid=$OPTARG;; n) export vfname=$OPTARG;; p) export LSB_DJOB_NUMPROC=$OPTARG;; q) export qname=$OPTARG;; ?) Usage esac done shift $(($OPTIND -1)) mpirunfile=$1 # validate args if [ "$mpirunfile" = "" ] then echo "Must provide an mpi_run_file" Usage fi if [ ! -f $mpirunfile ] then echo "mpi_run_file \"$mpirunfile\" does not exist" Usage fi # get opagetvf_func definition . /usr/bin/opagetvf_env case $vfselectmethod in vf_name) opagetvf2_func "-d '$vfname'" OMPI_MCA_btl_openib_pkey OMPI_MCA_btl_openib_ib_service_level OMPI_MCA_btl_openib_mtu if [ $? -ne 0 ] then echo "Failed to get environment variables for VF with Name \"$vfname\"" Usage fi export OMPI_MCA_mtl_psm_ib_pkey=$OMPI_MCA_btl_openib_pkey export OMPI_MCA_mtl_psm_ib_service_level=$OMPI_MCA_btl_openib_ib_service_level export PSM_MTU=$OMPI_MCA_btl_openib_mtu;; sid) opagetvf2_func "-S '$vfsid'" OMPI_MCA_btl_openib_pkey OMPI_MCA_btl_openib_ib_service_level OMPI_MCA_btl_openib_mtu if [ $? -ne 0 ] then echo "Failed to get environment variables for VF with SID \"$vfsid\"" Usage fi export OMPI_MCA_mtl_psm_ib_pkey=$OMPI_MCA_btl_openib_pkey export OMPI_MCA_mtl_psm_ib_service_level=$OMPI_MCA_btl_openib_ib_service_level export PSM_MTU=$OMPI_MCA_btl_openib_mtu;; *) echo Unknown vfselectmethod $vfselectmethod Usage;; esac if [ "$MPICH_PREFIX" = "" ] then . /usr/bin/iba_select_mpi if ! valid_mpich_prefix then find_mpi $prefix/mpi/gcc/openmpi* fi fi lsid -V 2>&1 | tee lsid.out > /dev/null version=`cat lsid.out | grep LSF | awk -F" " '{print $4}' | cut -d"." -f 1` if [ "$version" = "9" ] || [ "$version" = "8" ] then temp= for arg in $MPI_CMD_ARGS do temp="$temp -x '$arg'" done MPI_CMD_ARGS="$temp" # submit the job echo "#! /bin/sh" > .run.openmpi echo "#BSUB -n $LSB_DJOB_NUMPROC" >> .run.openmpi echo "#BSUB -o %J.out" >> .run.openmpi echo "#BSUB -e %J.err" >> .run.openmpi if [ "$qname" != "" ] then echo "#BSUB -q $qname" >> .run.openmpi fi echo $MPICH_PREFIX/bin/mpirun -np $LSB_DJOB_NUMPROC -hostfile \$LSB_DJOB_HOSTFILE $MPI_CMD_ARGS $* >> .run.openmpi bsub < .run.openmpi rm .run.openmpi else # submit the job from stdin - user mpirun.lsf if [ "$qname" != "" ] then qparam="#BSUB -q $qname" else qparam="" fi bsub -a openmpi << EOF #BSUB -n $LSB_DJOB_NUMPROC #BSUB -o %J.out #BSUB -e %J.err $qparam mpirun.lsf $MPI_CMD_ARGS $* EOF fi rm lsid.out exit 0