#! /bin/bash
# BEGIN_ICS_COPYRIGHT8 ****************************************
#
# Copyright (c) 2015, Intel Corporation
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice,
# this list of conditions and the following disclaimer.
# * Redistributions in binary form must reproduce the above copyright
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# documentation and/or other materials provided with the distribution.
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# [ICS VERSION STRING: unknown]
# initialize
# BASE PATH TO MPI EXECUTABLES: To use an alternate location,
# either edit this line or set MPICH_PREFIX in your environment.
# see iba_select_mpi for the set of default MPI selections
# default to MPI used for build
MPICH_PREFIX=
mpirunfile=
vfselectmethod=sid_qlc
vfname=
vfsid=
dsprtg=
qname=
numprocs=2
wrkdir=$HOME
mrailmap=
MPI_CMD_ARGS=
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MPICH_PREFIX/lib64/
MOAB_DJOB_QUEUE_ARGS=""
MOAB_DJOB_WRK_DIR_ARGS=""
# Usage - display usage syntax and exit
Usage()
{
echo "Usage: submit.openmpi.job [-V vf_select_method] [-s vf_sid] [-n vf_name]"
echo " [-d dsp_rtg] [-q queue_name] [-p num_processes] [-w wrk_dir]"
echo " [-m <unit:port>[,<unit:port>]]"
echo " mpi_run_file [mpi_run_file args]"
echo -e "\n where vf_select_method is one of:"
echo " vf_name: Name of virtual fabric - use -n to define vf name"
echo " sid : ServiceId of virtual fabric - use -s option to define service id"
echo " sid_qlc: ServiceId of virtual fabric - use -s option to define service id,"
echo " uses dist_sa (default)"
echo " where dsp_rtg is: 1-adaptive, 2-static_src, 3-static_dest, or 4-static_base"
echo " where queue_name is a valid Moab queue name (default queue is batch)"
echo " where num_processes is the number of processors to run MPI on"
echo " where wrk_dir is the directory the job should execute in (default $""HOME)"
echo " where unit:port is the unit/port pair is used to setup a rail"
exit 2
}
# process opts and args
while getopts r:h:V:s:n:d:p:q:w:m: param
do
case $param in
r)
export mpirunfile=$OPTARG;;
V)
export vfselectmethod=$OPTARG;;
s)
export vfsid=$OPTARG;;
n)
export vfname=$OPTARG;;
d)
export dsprtg=$OPTARG;;
p)
export numprocs=$OPTARG;;
q)
export qname=$OPTARG;;
w)
export wrkdir=$OPTARG;;
m)
export mrailmap=$OPTARG;;
?)
Usage
esac
done
shift $(($OPTIND -1))
mpirunfile=$1
# validate args
if [ "$mpirunfile" = "" ]
then
echo "Must provide a mpi_run_file"
Usage
fi
if [ ! -f $mpirunfile ]
then
echo "mpi_run_file \"$mpirunfile\" does not exist"
Usage
fi
if [ "$dsprtg" != "" ]
then
if [ $dsprtg -lt 1 -o $dsprtg -gt 4 ]
then
echo dispersive routing value must be between 1 and 4
Usage
fi
fi
# get opagetvf_func definition
. /usr/bin/opagetvf_env
case $vfselectmethod in
vf_name)
opagetvf2_func "-d '$vfname'" OMPI_MCA_btl_openib_pkey OMPI_MCA_btl_openib_ib_service_level OMPI_MCA_btl_openib_mtu
if [ $? -ne 0 ]
then
echo "Failed to get environment variables for VF with Name \"$vfname\""
Usage
fi
export OMPI_MCA_mtl_psm_ib_pkey=$OMPI_MCA_btl_openib_pkey
export OMPI_MCA_mtl_psm_ib_service_level=$OMPI_MCA_btl_openib_ib_service_level
export PSM_MTU=$OMPI_MCA_btl_openib_mtu;;
sid)
opagetvf2_func "-S '$vfsid'" OMPI_MCA_btl_openib_pkey OMPI_MCA_btl_openib_ib_service_level OMPI_MCA_btl_openib_mtu
if [ $? -ne 0 ]
then
echo "Failed to get environment variables for VF with SID \"$vfsid\""
Usage
fi
export OMPI_MCA_mtl_psm_ib_pkey=$OMPI_MCA_btl_openib_pkey
export OMPI_MCA_mtl_psm_ib_service_level=$OMPI_MCA_btl_openib_ib_service_level
export PSM_MTU=$OMPI_MCA_btl_openib_mtu;;
sid_qlc)
export OMPI_MCA_mtl_psm_path_query=opp
export OMPI_MCA_mtl_psm_ib_service_id=$vfsid;;
*)
echo Unknown vfselectmethod $vfselectmethod
Usage;;
esac
if [ "$dsprtg" != "" ]
then
case $dsprtg in
1)
export routing=adaptive;;
2)
export routing=static_src;;
3)
export routing=static_dest;;
4)
export routing=static_base;;
esac
export MPI_CMD_ARGS="PSM_PATH_SELECTION=$routing"
fi
if [ "$MPICH_PREFIX" = "" ]
then
. /usr/bin/iba_select_mpi
if ! valid_mpich_prefix
then
find_mpi $prefix/mpi/gcc/openmpi*qlc
fi
if ! valid_mpich_prefix
then
find_mpi $prefix/mpi/gcc/openmpi*
fi
fi
if [ "$qname" != "" ]
then
export MOAB_DJOB_QUEUE_ARGS="-q $qname"
fi
if [ ! -d $wrkdir ]
then
echo "wrk_dir \"$wrkdir\" does not exist"
Usage
fi
if [ "$wrkdir" != "" ]
then
export MOAB_DJOB_WRK_DIR_ARGS="-d $wrkdir"
fi
if [ "$mrailmap" != "" ]
then
. /usr/bin/opagetvf_env
iba_getpsm_func $mrailmap
if [ $? -ne 0 ]
then
echo "Failed to get environment variable for PSM with value \"$mrailmap\""
Usage
else
export MPI_CMD_ARGS="$MPI_CMD_ARGS PSM_MULTIRAIL=1 PSM_MULTIRAIL_MAP=$mrailmap"
fi
fi
if [ "$MPI_CMD_ARGS" != "" ]
then
export MPI_CMD_ARGS="-x \"$MPI_CMD_ARGS\""
fi
#
# submit the job from stdin
#
# parameters:
# -E: Moab adds standard Moab environment variables to the job's environment.
# -l: Defines the resources that are required by the job and establishes a
# limit to the amount of resource that can be consumed.
# + tpn: Tasks per node allowed on allocated hosts,
# + procs: Requests a specific amount of processors for the job.
# -q: Specifies the destination queue (Class) the job should execute in.
# -d: Specifies which directory the job should execute in.
# -V: Declares that all environment variables in the msub environment are
# exported to the batch job.
cat moab.mpi.job.wrapper > .run.openmpi
echo $MPICH_PREFIX/bin/mpirun -np $numprocs -hostfile '.mpi_hosts_file.$$' $MPI_CMD_ARGS $* >> .run.openmpi
msub -E -l procs=$numprocs $MOAB_DJOB_WRK_DIR_ARGS $MOAB_DJOB_QUEUE_ARGS -V .run.openmpi
rm .run.openmpi
exit 0