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#! /bin/bash
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# BEGIN_ICS_COPYRIGHT8 ****************************************
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#
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# Copyright (c) 2015, Intel Corporation
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are met:
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#
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# * Redistributions of source code must retain the above copyright notice,
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# this list of conditions and the following disclaimer.
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# * Redistributions in binary form must reproduce the above copyright
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# notice, this list of conditions and the following disclaimer in the
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# documentation and/or other materials provided with the distribution.
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# * Neither the name of Intel Corporation nor the names of its contributors
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# may be used to endorse or promote products derived from this software
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# without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE
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# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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#
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# END_ICS_COPYRIGHT8 ****************************************
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# [ICS VERSION STRING: unknown]
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# initialize
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# BASE PATH TO MPI EXECUTABLES: To use an alternate location,
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# either edit this line or set MPICH_PREFIX in your environment.
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# see iba_select_mpi for the set of default MPI selections
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# default to MPI used for build
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MPICH_PREFIX=
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mpirunfile=
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vfselectmethod=sid
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vfname=
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vfsid=
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qname=
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MPI_CMD_ARGS=
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LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MPICH_PREFIX/lib64/
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LSB_DJOB_NUMPROC=3
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# Usage - display usage syntax and exit
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Usage()
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{
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echo "Usage: submit.openmpi.job [-p num_processes] [-V vf_select_method] [-s vf_sid] [-n vf_name] [-q queue_name] mpi_run_file [mpi_run_file args]"
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echo " where vf_select_method is one of:"
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echo " vf_name: Name of virtual fabric - use -n to define vf name"
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echo " sid : ServiceId of virtual fabric - use -s option to define service id"
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echo " where queue_name is a valid LSF queue name (use bqueues for a list)"
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exit 2
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}
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# process opts and args
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while getopts V:s:n:p:q: param
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do
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case $param in
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V)
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export vfselectmethod=$OPTARG;;
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s)
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export vfsid=$OPTARG;;
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n)
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export vfname=$OPTARG;;
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p)
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export LSB_DJOB_NUMPROC=$OPTARG;;
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q)
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export qname=$OPTARG;;
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?)
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Usage
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esac
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done
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shift $(($OPTIND -1))
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mpirunfile=$1
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# validate args
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if [ "$mpirunfile" = "" ]
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then
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echo "Must provide an mpi_run_file"
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Usage
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fi
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if [ ! -f $mpirunfile ]
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then
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echo "mpi_run_file \"$mpirunfile\" does not exist"
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Usage
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fi
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# get opagetvf_func definition
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. /usr/bin/opagetvf_env
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case $vfselectmethod in
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vf_name)
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opagetvf2_func "-d '$vfname'" OMPI_MCA_btl_openib_pkey OMPI_MCA_btl_openib_ib_service_level OMPI_MCA_btl_openib_mtu
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if [ $? -ne 0 ]
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then
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echo "Failed to get environment variables for VF with Name \"$vfname\""
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Usage
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fi
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export OMPI_MCA_mtl_psm_ib_pkey=$OMPI_MCA_btl_openib_pkey
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export OMPI_MCA_mtl_psm_ib_service_level=$OMPI_MCA_btl_openib_ib_service_level
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export PSM_MTU=$OMPI_MCA_btl_openib_mtu;;
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sid)
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opagetvf2_func "-S '$vfsid'" OMPI_MCA_btl_openib_pkey OMPI_MCA_btl_openib_ib_service_level OMPI_MCA_btl_openib_mtu
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if [ $? -ne 0 ]
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then
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echo "Failed to get environment variables for VF with SID \"$vfsid\""
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Usage
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fi
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export OMPI_MCA_mtl_psm_ib_pkey=$OMPI_MCA_btl_openib_pkey
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export OMPI_MCA_mtl_psm_ib_service_level=$OMPI_MCA_btl_openib_ib_service_level
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export PSM_MTU=$OMPI_MCA_btl_openib_mtu;;
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*)
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echo Unknown vfselectmethod $vfselectmethod
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Usage;;
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esac
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if [ "$MPICH_PREFIX" = "" ]
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then
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. /usr/bin/iba_select_mpi
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if ! valid_mpich_prefix
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then
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find_mpi $prefix/mpi/gcc/openmpi*
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fi
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fi
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lsid -V 2>&1 | tee lsid.out > /dev/null
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version=`cat lsid.out | grep LSF | awk -F" " '{print $4}' | cut -d"." -f 1`
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if [ "$version" = "9" ] || [ "$version" = "8" ]
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then
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temp=
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for arg in $MPI_CMD_ARGS
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do
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temp="$temp -x '$arg'"
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done
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MPI_CMD_ARGS="$temp"
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# submit the job
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echo "#! /bin/sh" > .run.openmpi
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echo "#BSUB -n $LSB_DJOB_NUMPROC" >> .run.openmpi
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echo "#BSUB -o %J.out" >> .run.openmpi
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echo "#BSUB -e %J.err" >> .run.openmpi
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if [ "$qname" != "" ]
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then
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echo "#BSUB -q $qname" >> .run.openmpi
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fi
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echo $MPICH_PREFIX/bin/mpirun -np $LSB_DJOB_NUMPROC -hostfile \$LSB_DJOB_HOSTFILE $MPI_CMD_ARGS $* >> .run.openmpi
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bsub < .run.openmpi
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rm .run.openmpi
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else
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# submit the job from stdin - user mpirun.lsf
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if [ "$qname" != "" ]
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then
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qparam="#BSUB -q $qname"
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else
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qparam=""
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fi
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bsub -a openmpi << EOF
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#BSUB -n $LSB_DJOB_NUMPROC
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#BSUB -o %J.out
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#BSUB -e %J.err
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$qparam
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mpirun.lsf $MPI_CMD_ARGS $*
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EOF
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fi
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rm lsid.out
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exit 0
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