Blame filter/test_rmedian.c

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/* filter/test_rmedian.c
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 * 
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 * Copyright (C) 2018 Patrick Alken
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 * 
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 3 of the License, or (at
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 * your option) any later version.
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 * 
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 * This program is distributed in the hope that it will be useful, but
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 * WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
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 * General Public License for more details.
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 * 
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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 */
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#include <gsl/gsl_math.h>
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#include <gsl/gsl_vector.h>
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#include <gsl/gsl_test.h>
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#include <gsl/gsl_rng.h>
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#include <gsl/gsl_randist.h>
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#include <gsl/gsl_statistics.h>
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/* slow/dumb rmedian which constructs actual window for each sample, sorts
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 * it and finds median */
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static int
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slow_rmedian(const gsl_filter_end_t endtype, const gsl_vector * x, gsl_vector * y, const int K)
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{
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  const int n = (int) x->size;
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  const int H = K / 2;
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  double *window = malloc(K * sizeof(double));
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  int i;
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  for (i = 0; i < n; ++i)
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    {
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      size_t wsize = gsl_movstat_fill(endtype, x, i, H, H, window);
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      double yi;
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      int j;
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      /* fill first half of window with previous filter output values */
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      for (j = i - H; j < i; ++j)
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        {
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          if (j < 0)
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            {
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              if (endtype == GSL_FILTER_END_PADVALUE)
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                window[j - i + H] = gsl_vector_get(x, 0);
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              else if (endtype == GSL_FILTER_END_PADZERO)
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                window[j - i + H] = 0.0;
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            }
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          else
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            {
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              window[j - i + H] = gsl_vector_get(y, j);
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            }
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        }
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      yi = gsl_stats_median(window, 1, wsize);
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      gsl_vector_set(y, i, yi);
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    }
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  free(window);
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  return GSL_SUCCESS;
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}
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/* test square wave input (root signal) */
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static void
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test_rmedian_root(const gsl_filter_end_t etype, const size_t n, const size_t k)
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{
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  const double tol = 1.0e-12;
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  gsl_filter_rmedian_workspace *w = gsl_filter_rmedian_alloc(k);
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  gsl_vector *x = gsl_vector_alloc(n);
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  gsl_vector *y = gsl_vector_alloc(n);
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  char buf[2048];
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  size_t i;
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  /* test a root sequence (square input): x = [zero one zero] */
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  gsl_vector_set_all(x, 0.0);
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  for (i = n / 3; i <= n / 2; ++i)
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    gsl_vector_set(x, i, 1.0);
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  /* compute y = rmedian(x) and test y = x */
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  gsl_filter_rmedian(etype, x, y, w);
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  sprintf(buf, "n=%zu k=%zu RMF square wave root sequence", n, k);
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  compare_vectors(tol, y, x, buf);
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  gsl_vector_free(x);
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  gsl_vector_free(y);
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  gsl_filter_rmedian_free(w);
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}
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/* test random input and in-place */
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static void
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test_rmedian_random(const gsl_filter_end_t etype, const size_t n, const int K, gsl_rng * r)
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{
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  const double tol = 1.0e-12;
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  gsl_filter_rmedian_workspace *w = gsl_filter_rmedian_alloc(K);
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  gsl_vector *x = gsl_vector_alloc(n);
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  gsl_vector *y = gsl_vector_alloc(n);
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  gsl_vector *z = gsl_vector_alloc(n);
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  char buf[2048];
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  /* test filter with random input against slow algorithm */
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  random_vector(x, r);
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  /* y = rmedian(x) */
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  gsl_filter_rmedian(etype, x, y, w);
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  /* y = rmedian(x) with slow algorithm */
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  slow_rmedian(etype, x, z, K);
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  /* test y = z */
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  sprintf(buf, "n=%zu K=%d RMF symmetric random slow test", n, K);
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  compare_vectors(tol, y, z, buf);
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  /* test in-place filter */
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  /* z = rmedian(x) in-place */
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  gsl_vector_memcpy(z, x);
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  gsl_filter_rmedian(etype, z, z, w);
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  sprintf(buf, "n=%zu K=%d RMF symmetric random in-place", n, K);
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  compare_vectors(tol, z, y, buf);
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  gsl_vector_free(x);
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  gsl_vector_free(y);
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  gsl_vector_free(z);
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  gsl_filter_rmedian_free(w);
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}
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void
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test_rmedian(gsl_rng * rng_p)
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{
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  /* test root sequences */
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  test_rmedian_root(GSL_FILTER_END_PADZERO, 1000, 3);
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  test_rmedian_root(GSL_FILTER_END_PADZERO, 2000, 101);
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  test_rmedian_root(GSL_FILTER_END_PADVALUE, 1000, 3);
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  test_rmedian_root(GSL_FILTER_END_PADVALUE, 2000, 101);
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  /* test random input */
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  test_rmedian_random(GSL_FILTER_END_PADZERO, 10, 1, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADZERO, 100, 3, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADZERO, 1000, 3, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADZERO, 100, 1001, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADZERO, 5, 7, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADVALUE, 10, 1, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADVALUE, 100, 3, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADVALUE, 1000, 3, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADVALUE, 100, 1001, rng_p);
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  test_rmedian_random(GSL_FILTER_END_PADVALUE, 5, 7, rng_p);
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}