/*
* bibcore.c
*
* Copyright (c) Chris Putnam 2005-2018
*
* Source code released under the GPL version 2
*
*/
#include <stdio.h>
#include <stdlib.h>
#include "bibutils.h"
/* internal includes */
#include "reftypes.h"
#include "charsets.h"
#include "str_conv.h"
#include "is_ws.h"
/* illegal modes to pass in, but use internally for consistency */
#define BIBL_INTERNALIN (BIBL_LASTIN+1)
#define BIBL_INTERNALOUT (BIBL_LASTOUT+1)
#define debug_set( p ) ( p->verbose > 1 )
#define verbose_set( p ) ( p->verbose )
static void
report_params( FILE *fp, const char *f, param *p )
{
fprintf( fp, "-------------------params start for %s\n", f );
fprintf( fp, "\tprogname='%s'\n\n", p->progname );
fprintf( fp, "\treadformat=%d", p->readformat );
switch ( p->readformat ) {
case BIBL_INTERNALIN: fprintf( fp, " (BIBL_INTERNALIN)\n" ); break;
case BIBL_MODSIN: fprintf( fp, " (BIBL_MODSIN)\n" ); break;
case BIBL_BIBTEXIN: fprintf( fp, " (BIBL_BIBTEXIN)\n" ); break;
case BIBL_RISIN: fprintf( fp, " (BIBL_RISIN)\n" ); break;
case BIBL_ENDNOTEIN: fprintf( fp, " (BIBL_ENDNOTEIN)\n" ); break;
case BIBL_COPACIN: fprintf( fp, " (BIBL_COPACIN)\n" ); break;
case BIBL_ISIIN: fprintf( fp, " (BIBL_ISIIN)\n" ); break;
case BIBL_MEDLINEIN: fprintf( fp, " (BIBL_MEDLINEIN)\n" ); break;
case BIBL_ENDNOTEXMLIN: fprintf( fp, " (BIBL_ENDNOTEXMLIN)\n" ); break;
case BIBL_BIBLATEXIN: fprintf( fp, " (BIBL_BIBLATEXIN)\n" ); break;
case BIBL_EBIIN: fprintf( fp, " (BIBL_EBIIN)\n" ); break;
case BIBL_WORDIN: fprintf( fp, " (BIBL_WORDIN)\n" ); break;
case BIBL_NBIBIN: fprintf( fp, " (BIBL_NBIBIN)\n" ); break;
default: fprintf( fp, " (Illegal value)\n" ); break;
}
fprintf( fp, "\tcharsetin=%d\n", p->charsetin );
fprintf( fp, "\tcharsetin_src=%d", p->charsetin_src );
switch ( p->charsetin_src ) {
case BIBL_SRC_DEFAULT: fprintf( fp, " (BIBL_SRC_DEFAULT)\n" ); break;
case BIBL_SRC_FILE: fprintf( fp, " (BIBL_SRC_FILE)\n" ); break;
case BIBL_SRC_USER: fprintf( fp, " (BIBL_SRC_USER)\n" ); break;
default: fprintf( fp, " (Illegal value)\n" ); break;
}
fprintf( fp, "\tutf8in=%d\n", p->utf8in );
fprintf( fp, "\tlatexin=%d\n", p->latexin );
fprintf( fp, "\txmlin=%d\n\n", p->xmlin );
fprintf( fp, "\twriteformat=%d", p->writeformat );
switch ( p->writeformat ) {
case BIBL_INTERNALOUT: fprintf( fp, " (BIBL_INTERNALOUT)\n" ); break;
case BIBL_ADSABSOUT: fprintf( fp, " (BIBL_ADSABSOUT)\n" ); break;
case BIBL_BIBTEXOUT: fprintf( fp, " (BIBL_BIBTEXOUT)\n" ); break;
case BIBL_ENDNOTEOUT: fprintf( fp, " (BIBL_ENDNOTEOUT)\n" ); break;
case BIBL_ISIOUT: fprintf( fp, " (BIBL_ISIOUT)\n" ); break;
case BIBL_MODSOUT: fprintf( fp, " (BIBL_MODSOUT)\n" ); break;
case BIBL_NBIBOUT: fprintf( fp, " (BIBL_NBIBOUT)\n" ); break;
case BIBL_RISOUT: fprintf( fp, " (BIBL_RISOUT)\n" ); break;
case BIBL_WORD2007OUT: fprintf( fp, " (BIBL_WORD2007OUT)\n" ); break;
default: fprintf( fp, " (Illegal value)\n"); break;
}
fprintf( fp, "\tcharsetout=%d\n", p->charsetout );
fprintf( fp, "\tcharsetout_src=%d", p->charsetout_src );
switch ( p->charsetout_src ) {
case BIBL_SRC_DEFAULT: fprintf( fp, " (BIBL_SRC_DEFAULT)\n" ); break;
case BIBL_SRC_FILE: fprintf( fp, " (BIBL_SRC_FILE)\n" ); break;
case BIBL_SRC_USER: fprintf( fp, " (BIBL_SRC_USER)\n" ); break;
default: fprintf( fp, " (Illegal value)\n" ); break;
}
fprintf( fp, "\tutf8out=%d\n", p->utf8out );
fprintf( fp, "\tutf8bom=%d\n", p->utf8bom );
fprintf( fp, "\tlatexout=%d\n", p->latexout );
fprintf( fp, "\txmlout=%d\n", p->xmlout );
fprintf( fp, "-------------------params end for %s\n", f );
fflush( fp );
}
/* bibl_duplicateparams()
*
* Returns status of BIBL_OK or BIBL_ERR_MEMERR
*/
static int
bibl_duplicateparams( param *np, param *op )
{
int status;
slist_init( &(np->asis) );
slist_init( &(np->corps) );
status = slist_copy( &(np->asis), &(op->asis ) );
if ( status!=SLIST_OK ) return BIBL_ERR_MEMERR;
status = slist_copy( &(np->corps), &(op->corps ) );
if ( status!=SLIST_OK ) return BIBL_ERR_MEMERR;
if ( !op->progname ) np->progname = NULL;
else {
np->progname = strdup( op->progname );
if ( !np->progname ) return BIBL_ERR_MEMERR;
}
np->readformat = op->readformat;
np->writeformat = op->writeformat;
np->charsetin = op->charsetin;
np->charsetin_src = op->charsetin_src;
np->utf8in = op->utf8in;
np->latexin = op->latexin;
np->xmlin = op->xmlin;
np->charsetout = op->charsetout;
np->charsetout_src = op->charsetout_src;
np->utf8out = op->utf8out;
np->utf8bom = op->utf8bom;
np->latexout = op->latexout;
np->xmlout = op->xmlout;
np->nosplittitle = op->nosplittitle;
np->verbose = op->verbose;
np->format_opts = op->format_opts;
np->addcount = op->addcount;
np->output_raw = op->output_raw;
np->singlerefperfile = op->singlerefperfile;
np->readf = op->readf;
np->processf = op->processf;
np->cleanf = op->cleanf;
np->typef = op->typef;
np->convertf = op->convertf;
np->headerf = op->headerf;
np->footerf = op->footerf;
np->writef = op->writef;
np->all = op->all;
np->nall = op->nall;
return BIBL_OK;
}
/* bibl_setreadparams()
*
* Returns status of BIBL_OK or BIBL_ERR_MEMERR
*/
static int
bibl_setreadparams( param *np, param *op )
{
int status;
status = bibl_duplicateparams( np, op );
if ( status == BIBL_OK ) {
np->utf8out = 1;
np->charsetout = BIBL_CHARSET_UNICODE;
np->charsetout_src = BIBL_SRC_DEFAULT;
np->xmlout = BIBL_XMLOUT_FALSE;
np->latexout = 0;
np->writeformat = BIBL_INTERNALOUT;
}
return status;
}
/* bibl_setwriteparams()
*
* Returns status of BIBL_OK or BIBL_ERR_MEMERR
*/
static int
bibl_setwriteparams( param *np, param *op )
{
int status;
status = bibl_duplicateparams( np, op );
if ( status == BIBL_OK ) {
np->xmlin = 0;
np->latexin = 0;
np->utf8in = 1;
np->charsetin = BIBL_CHARSET_UNICODE;
np->charsetin_src = BIBL_SRC_DEFAULT;
np->readformat = BIBL_INTERNALIN;
}
return status;
}
void
bibl_freeparams( param *p )
{
if ( p ) {
slist_free( &(p->asis) );
slist_free( &(p->corps) );
if ( p->progname ) free( p->progname );
}
}
int
bibl_readasis( param *p, char *f )
{
int status;
if ( !p ) return BIBL_ERR_BADINPUT;
if ( !f ) return BIBL_ERR_BADINPUT;
status = slist_fill( &(p->asis), f, 1 );
if ( status == SLIST_ERR_CANTOPEN ) return BIBL_ERR_CANTOPEN;
else if ( status == SLIST_ERR_MEMERR ) return BIBL_ERR_MEMERR;
return BIBL_OK;
}
int
bibl_readcorps( param *p, char *f )
{
int status;
if ( !p ) return BIBL_ERR_BADINPUT;
if ( !f ) return BIBL_ERR_BADINPUT;
status = slist_fill( &(p->corps), f, 1 );
if ( status == SLIST_ERR_CANTOPEN ) return BIBL_ERR_CANTOPEN;
else if ( status == 0 ) return BIBL_ERR_MEMERR;
return BIBL_OK;
}
/* bibl_addtoasis()
*
* Returns BIBL_OK or BIBL_ERR_MEMERR
*/
int
bibl_addtoasis( param *p, char *d )
{
str *s;
if ( !p ) return BIBL_ERR_BADINPUT;
if ( !d ) return BIBL_ERR_BADINPUT;
s = slist_addc( &(p->asis), d );
return ( s==NULL )? BIBL_ERR_MEMERR : BIBL_OK;
}
/* bibl_addtocorps()
*
* Returns BIBL_OK or BIBL_ERR_MEMERR
*/
int
bibl_addtocorps( param *p, char *d )
{
str *s;
if ( !p ) return BIBL_ERR_BADINPUT;
if ( !d ) return BIBL_ERR_BADINPUT;
s = slist_addc( &(p->corps), d );
return ( s==NULL )? BIBL_ERR_MEMERR : BIBL_OK;
}
void
bibl_reporterr( int err )
{
fprintf( stderr, "Bibutils: " );
switch( err ) {
case BIBL_OK:
fprintf( stderr, "No error." ); break;
case BIBL_ERR_BADINPUT:
fprintf( stderr, "Bad input." ); break;
case BIBL_ERR_MEMERR:
fprintf( stderr, "Memory error." ); break;
case BIBL_ERR_CANTOPEN:
fprintf( stderr, "Can't open." ); break;
default:
fprintf( stderr, "Cannot identify error code %d.", err ); break;
}
fprintf( stderr, "\n" );
}
static int
bibl_illegalinmode( int mode )
{
if ( mode < BIBL_FIRSTIN || mode > BIBL_LASTIN ) return 1;
else return 0;
}
static int
bibl_illegaloutmode( int mode )
{
if ( mode < BIBL_FIRSTOUT || mode > BIBL_LASTOUT ) return 1;
else return 0;
}
static void
bibl_verbose2( fields *f, char *filename, long nrefs )
{
int i, n;
n = fields_num( f );
fprintf( stderr, "======== %s %ld : converted\n", filename, nrefs );
for ( i=0; i<n; ++i ) {
fprintf( stderr, "'%s'='%s' level=%d\n",
(char*) fields_tag( f, i, FIELDS_CHRP_NOUSE ),
(char*) fields_value( f, i, FIELDS_CHRP_NOUSE ),
fields_level( f, i ) );
}
fprintf( stderr, "\n" );
fflush( stderr );
}
#if 0
static void
bibl_verbose1( fields *f, fields *orig, char *filename, long nrefs )
{
int i, n;
n = fields_num( orig );
fprintf( stderr, "======== %s %ld : processed\n", filename, nrefs );
for ( i=0; i<n; ++i ) {
fprintf( stderr, "'%s'='%s' level=%d\n",
(char*) fields_tag( orig, i, FIELDS_CHRP_NOUSE ),
(char*) fields_value( orig, i, FIELDS_CHRP_NOUSE ),
fields_level( orig, i ) );
}
if ( f ) bibl_verbose2( f, filename, nrefs );
}
#endif
static void
bibl_verbose0( bibl *bin )
{
int i;
for ( i=0; i<bin->nrefs; ++i )
bibl_verbose2( bin->ref[i], "", i+1 );
}
/* extract_tag_value
*
* Extract the tag and the value for ALWAYS/DEFAULT
* entries like: "GENRE:BIBUTILS|Masters thesis"
*
* tag = "GENRE:BIBUTILS"
* value = "Masters thesis"
*/
static int
extract_tag_value( str *tag, str *value, char *p )
{
str_empty( tag );
while ( p && *p && *p!='|' ) {
str_addchar( tag, *p );
p++;
}
if ( str_memerr( tag ) ) return BIBL_ERR_MEMERR;
if ( p && *p=='|' ) p++;
str_empty( value );
while ( p && *p ) {
str_addchar( value, *p );
p++;
}
if ( str_memerr( tag ) ) return BIBL_ERR_MEMERR;
return BIBL_OK;
}
/* process_defaultadd()
*
* Add tag/value pairs that have "DEFAULT" processing
* unless a tag/value pair with the same tag has already
* been adding during reference processing.
*/
static int
process_defaultadd( fields *f, int reftype, param *r )
{
int i, n, process, level, status, ret = BIBL_OK;
str tag, value;
char *p;
strs_init( &tag, &value, NULL );
for ( i=0; i<r->all[reftype].ntags; ++i ) {
process = ((r->all[reftype]).tags[i]).processingtype;
if ( process!=DEFAULT ) continue;
level = ((r->all[reftype]).tags[i]).level;
p = ((r->all[reftype]).tags[i]).newstr;
status = extract_tag_value( &tag, &value, p );
if ( status!=BIBL_OK ) {
ret = status;
goto out;
}
n = fields_find( f, tag.data, level );
if ( n==FIELDS_NOTFOUND ) {
status = fields_add( f, tag.data, value.data, level );
if ( status!=FIELDS_OK ) {
ret = BIBL_ERR_MEMERR;
goto out;
}
}
}
out:
strs_free( &tag, &value, NULL );
return ret;
}
/* process_alwaysadd()
*
* Add tag/value pair to reference from the ALWAYS
* processing type without exception (the difference from
* DEFAULT processing).
*/
static int
process_alwaysadd( fields *f, int reftype, param *r )
{
int i, process, level, status, ret = BIBL_OK;
str tag, value;
char *p;
strs_init( &tag, &value, NULL );
for ( i=0; i<r->all[reftype].ntags; ++i ) {
process = ((r->all[reftype]).tags[i]).processingtype;
if ( process!=ALWAYS ) continue;
level = ((r->all[reftype]).tags[i]).level;
p = ((r->all[reftype]).tags[i]).newstr;
status = extract_tag_value( &tag, &value, p );
if ( status!=BIBL_OK ) {
ret = status;
goto out;
}
status = fields_add( f, tag.data, value.data, level );
if ( status!=FIELDS_OK ) {
ret = BIBL_ERR_MEMERR;
goto out;
}
}
out:
strs_free( &tag, &value, NULL );
return ret;
}
static int
read_ref( FILE *fp, bibl *bin, char *filename, param *p )
{
int nrefs = 0, bufpos = 0, ok, ret=BIBL_OK, fcharset;/* = CHARSET_UNKNOWN;*/
str reference, line;
char buf[256]="";
fields *ref;
str_init( &reference );
str_init( &line );
while ( p->readf( fp, buf, sizeof(buf), &bufpos, &line, &reference, &fcharset ) ) {
if ( reference.len==0 ) continue;
ref = fields_new();
if ( !ref ) {
ret = BIBL_ERR_MEMERR;
bibl_free( bin );
goto out;
}
if ( p->processf( ref, reference.data, filename, nrefs+1, p )){
ok = bibl_addref( bin, ref );
if ( !ok ) {
ret = BIBL_ERR_MEMERR;
bibl_free( bin );
fields_delete( ref );
goto out;
}
} else {
fields_delete( ref );
}
str_empty( &reference );
if ( fcharset!=CHARSET_UNKNOWN ) {
/* charset from file takes priority over default, but
* not user-specified */
if ( p->charsetin_src!=BIBL_SRC_USER ) {
p->charsetin_src = BIBL_SRC_FILE;
p->charsetin = fcharset;
if ( fcharset!=CHARSET_UNICODE ) p->utf8in = 0;
}
}
}
if ( p->charsetin==CHARSET_UNICODE ) p->utf8in = 1;
out:
str_free( &line );
str_free( &reference );
return ret;
}
/* Don't manipulate latex for URL's and the like */
static int
bibl_notexify( char *tag )
{
char *protected[] = { "DOI", "URL", "REFNUM", "FILEATTACH" };
int i, nprotected = sizeof( protected ) / sizeof( protected[0] );
for ( i=0; i<nprotected; ++i )
if ( !strcasecmp( tag, protected[i] ) ) return 1;
return 0;
}
/* bibl_fixcharsetdata()
*
* returns BIBL_OK or BIBL_ERR_MEMERR
*/
static int
bibl_fixcharsetdata( fields *ref, param *p )
{
str *data;
char *tag;
long i, n;
int ok;
n = fields_num( ref );
for ( i=0; i<n; ++i ) {
tag = fields_tag( ref, i, FIELDS_CHRP_NOUSE );
data = fields_value( ref, i, FIELDS_STRP_NOUSE );
if ( bibl_notexify( tag ) ) {
ok = str_convert( data,
p->charsetin, 0, p->utf8in, p->xmlin,
p->charsetout, 0, p->utf8out, p->xmlout );
} else {
ok = str_convert( data,
p->charsetin, p->latexin, p->utf8in, p->xmlin,
p->charsetout, p->latexout, p->utf8out, p->xmlout );
}
if ( !ok ) return BIBL_ERR_MEMERR;
}
return BIBL_OK;
}
/* bibl_fixcharsets()
*
* returns BIBL_OK or BIBL_ERR_MEMERR
*/
static int
bibl_fixcharsets( bibl *b, param *p )
{
int status = BIBL_OK;
long i;
for ( i=0; i<b->nrefs && status==BIBL_OK; ++i )
status = bibl_fixcharsetdata( b->ref[i], p );
return status;
}
static int
build_refnum( fields *f, long nrefs, int *n )
{
char *year, *author, *p, num[512];
int status, ret = BIBL_OK;
str refnum;
*n = -1;
str_init( &refnum );
year = fields_findv( f, LEVEL_MAIN, FIELDS_CHRP_NOUSE, "DATE:YEAR" );
if ( !year )
year = fields_findv_firstof( f, LEVEL_ANY, FIELDS_CHRP_NOUSE,
"DATE:YEAR", "PARTDATE:YEAR", NULL );
author = fields_findv( f, LEVEL_MAIN, FIELDS_CHRP_NOUSE, "AUTHOR" );
if ( !author )
author = fields_findv_firstof( f, LEVEL_ANY, FIELDS_CHRP_NOUSE,
"AUTHOR", "AUTHOR:CORP", "AUTHOR:ASIS", NULL );
if ( year && author ) {
p = author;
while ( *p && *p!='|' )
str_addchar( &refnum, *p++ );
p = year;
while ( *p && *p!=' ' && *p!='\t' )
str_addchar( &refnum, *p++ );
} else {
sprintf( num, "%ld", nrefs );
str_mergestrs( &refnum, "ref", num, NULL );
}
if ( str_memerr( &refnum ) ) {
ret = BIBL_ERR_MEMERR;
goto out;
}
status = fields_add( f, "REFNUM", refnum.data, LEVEL_MAIN );
if ( status!=FIELDS_OK ) ret = BIBL_ERR_MEMERR;
else *n = fields_find( f, "REFNUM", LEVEL_MAIN );
out:
str_free( &refnum );
return ret;
}
static int
bibl_checkrefid( bibl *b, param *p )
{
char buf[512];
int n, status;
fields *ref;
long i;
for ( i=0; i<b->nrefs; ++i ) {
ref = b->ref[i];
n = fields_find( ref, "REFNUM", LEVEL_MAIN );
if ( n==FIELDS_NOTFOUND ) {
status = build_refnum( ref, i+1, &n );
if ( status!=BIBL_OK ) return status;
}
if ( p->addcount ) {
sprintf( buf, "_%ld", i+1 );
str_strcatc( &(ref->data[n]), buf );
if ( str_memerr( &(ref->data[n]) ) )
return BIBL_ERR_MEMERR;
}
}
return BIBL_OK;
}
static int
generate_citekey( fields *f, int nref )
{
int n1, n2, status, ret;
char *p, buf[100];
str citekey;
str_init( &citekey );
n1 = fields_find( f, "AUTHOR", LEVEL_MAIN );
if ( n1==FIELDS_NOTFOUND ) n1 = fields_find( f, "AUTHOR", LEVEL_ANY );
n2 = fields_find( f, "DATE:YEAR", LEVEL_MAIN );
if ( n2==FIELDS_NOTFOUND ) n2 = fields_find( f, "DATE:YEAR", LEVEL_ANY );
if ( n2==FIELDS_NOTFOUND ) n2 = fields_find( f, "PARTDATE:YEAR", LEVEL_MAIN );
if ( n2==FIELDS_NOTFOUND ) n2 = fields_find( f, "PARTDATE:YEAR", LEVEL_ANY );
if ( n1!=FIELDS_NOTFOUND && n2!=FIELDS_NOTFOUND ) {
p = f->data[n1].data;
while ( p && *p && *p!='|' ) {
if ( !is_ws( *p ) ) str_addchar( &citekey, *p );
p++;
}
p = f->data[n2].data;
while ( p && *p ) {
if ( !is_ws( *p ) ) str_addchar( &citekey, *p );
p++;
}
if ( str_memerr( &citekey ) ) {
ret = -1;
goto out;
}
status = fields_add( f, "REFNUM", citekey.data, 0 );
if ( status!=FIELDS_OK ) {
ret = -1;
goto out;
}
} else {
sprintf( buf, "ref%d\n", nref );
str_strcpyc( &citekey, buf );
}
ret = fields_find( f, "REFNUM", LEVEL_ANY );
out:
str_free( &citekey );
return ret;
}
static int
resolve_citekeys( bibl *b, slist *citekeys, int *dup )
{
const char abc[]="abcdefghijklmnopqrstuvwxyz";
int nsame, ntmp, n, i, j, status = BIBL_OK;
str tmp;
str_init( &tmp );
for ( i=0; i<citekeys->n; ++i ) {
if ( dup[i]==-1 ) continue;
nsame = 0;
for ( j=i; j<citekeys->n; ++j ) {
if ( dup[j]!=i ) continue;
str_strcpy( &tmp, slist_str( citekeys, j ) );
if ( str_memerr( &tmp ) ) {
status = BIBL_ERR_MEMERR;
goto out;
}
ntmp = nsame;
while ( ntmp >= 26 ) {
str_addchar( &tmp, 'a' );
ntmp -= 26;
}
if ( ntmp<26 && ntmp>=0 )
str_addchar( &tmp, abc[ntmp] );
if ( str_memerr( &tmp ) ) {
status = BIBL_ERR_MEMERR;
goto out;
}
nsame++;
dup[j] = -1;
n = fields_find( b->ref[j], "REFNUM", LEVEL_ANY );
if ( n!=FIELDS_NOTFOUND ) {
str_strcpy(&((b->ref[j])->data[n]),&tmp);
if ( str_memerr( &((b->ref[j])->data[n]) ) ) {
status = BIBL_ERR_MEMERR;
goto out;
}
}
}
}
out:
str_free( &tmp );
return status;
}
static int
get_citekeys( bibl *b, slist *citekeys )
{
fields *f;
int i, n;
str *s;
for ( i=0; i<b->nrefs; ++i ) {
f = b->ref[i];
n = fields_find( f, "REFNUM", LEVEL_ANY );
if ( n==FIELDS_NOTFOUND ) n = generate_citekey( f, i );
if ( n!=FIELDS_NOTFOUND && f->data[n].data ) {
s = slist_add( citekeys, &(f->data[n]) );
if ( !s ) return BIBL_ERR_MEMERR;
} else {
s = slist_addc( citekeys, "" );
if ( !s ) return BIBL_ERR_MEMERR;
}
}
return BIBL_OK;
}
static int
dup_citekeys( bibl *b, slist *citekeys )
{
int i, j, status = BIBL_OK, *dup, ndup=0;
dup = ( int * ) malloc( sizeof( int ) * citekeys->n );
if ( !dup ) return BIBL_ERR_MEMERR;
for ( i=0; i<citekeys->n; ++i ) dup[i] = -1;
for ( i=0; i<citekeys->n-1; ++i ) {
if ( dup[i]!=-1 ) continue;
for ( j=i+1; j<citekeys->n; ++j ) {
if ( !strcmp( slist_cstr( citekeys, i ),
slist_cstr( citekeys, j ) ) ) {
dup[i] = i;
dup[j] = i;
ndup++;
}
}
}
if ( ndup ) status = resolve_citekeys( b, citekeys, dup );
free( dup );
return status;
}
static int
uniqueify_citekeys( bibl *b )
{
slist citekeys;
int status;
slist_init( &citekeys );
status = get_citekeys( b, &citekeys );
if ( status!=BIBL_OK ) goto out;
status = dup_citekeys( b, &citekeys );
out:
slist_free( &citekeys );
return status;
}
static int
clean_ref( bibl *bin, param *p )
{
if ( p->cleanf ) return p->cleanf( bin, p );
else return BIBL_OK;
}
static int
convert_ref( bibl *bin, char *fname, bibl *bout, param *p )
{
fields *rin, *rout;
int reftype = 0, ok, status;
long i;
for ( i=0; i<bin->nrefs; ++i ) {
rin = bin->ref[i];
rout = fields_new();
if ( !rout ) return BIBL_ERR_MEMERR;
if ( p->typef )
reftype = p->typef( rin, fname, i+1, p );
status = p->convertf( rin, rout, reftype, p );
if ( status!=BIBL_OK ) return status;
if ( p->all ) {
status = process_alwaysadd( rout, reftype, p );
if ( status!=BIBL_OK ) return status;
status = process_defaultadd( rout, reftype, p );
if ( status!=BIBL_OK ) return status;
}
ok = bibl_addref( bout, rout );
if ( !ok ) return BIBL_ERR_MEMERR;
}
if ( debug_set( p ) ) {
fflush( stdout );
fprintf( stderr, "-------------------start for convert_ref\n");
bibl_verbose0( bout );
fprintf( stderr, "-------------------end for convert_ref\n" );
fflush( stderr );
}
status = uniqueify_citekeys( bout );
return status;
}
int
bibl_read( bibl *b, FILE *fp, char *filename, param *p )
{
int ok, status;
param lp;
bibl bin;
if ( !b ) return BIBL_ERR_BADINPUT;
if ( !fp ) return BIBL_ERR_BADINPUT;
if ( !p ) return BIBL_ERR_BADINPUT;
if ( bibl_illegalinmode( p->readformat ) ) {
if ( debug_set( p ) ) {
fflush( stdout );
report_params( stderr, "bibl_read", p );
}
return BIBL_ERR_BADINPUT;
}
status = bibl_setreadparams( &lp, p );
if ( status!=BIBL_OK ) {
if ( debug_set( p ) ) {
fflush( stdout );
report_params( stderr, "bibl_read", p );
}
return status;
}
bibl_init( &bin );
status = read_ref( fp, &bin, filename, &lp );
if ( status!=BIBL_OK ) {
if ( debug_set( p ) ) {
fflush( stdout );
report_params( stderr, "bibl_read", &lp );
}
bibl_freeparams( &lp );
return status;
}
if ( debug_set( p ) ) {
fflush( stdout );
report_params( stderr, "bibl_read", &lp );
fprintf( stderr, "-------------------raw_input start for bibl_read\n");
bibl_verbose0( &bin );
fprintf( stderr, "-------------------raw_input end for bibl_read\n" );
fflush( stderr );
}
if ( !lp.output_raw || ( lp.output_raw & BIBL_RAW_WITHCHARCONVERT ) ) {
status = bibl_fixcharsets( &bin, &lp );
if ( status!=BIBL_OK ) return status;
if ( debug_set( p ) ) {
fprintf( stderr, "-------------------post_fixcharsets start for bibl_read\n");
bibl_verbose0( &bin );
fprintf( stderr, "-------------------post_fixcharsets end for bibl_read\n" );
fflush( stderr );
}
}
if ( !lp.output_raw ) {
status = clean_ref( &bin, &lp );
if ( status!=BIBL_OK ) return status;
if ( debug_set( p ) ) {
fprintf( stderr, "-------------------post_clean_ref start for bibl_read\n");
bibl_verbose0( &bin );
fprintf( stderr, "-------------------post_clean_ref end for bibl_read\n" );
fflush( stderr );
}
ok = convert_ref( &bin, filename, b, &lp );
if ( ok!=BIBL_OK ) return ok;
if ( debug_set( p ) ) {
fprintf( stderr, "-------------------post_convert_ref start for bibl_read\n");
bibl_verbose0( &bin );
fprintf( stderr, "-------------------post_convert_ref end for bibl_read\n" );
fflush( stderr );
}
} else {
if ( debug_set( p ) ) {
fprintf( stderr, "-------------------here1 start for bibl_read\n");
bibl_verbose0( &bin );
fprintf( stderr, "-------------------here1 end for bibl_read\n" );
fflush( stderr );
}
ok = bibl_copy( b, &bin );
if ( !ok ) {
bibl_freeparams( &lp );
return BIBL_ERR_MEMERR;
}
}
if ( !lp.output_raw || ( lp.output_raw & BIBL_RAW_WITHMAKEREFID ) )
bibl_checkrefid( b, &lp );
bibl_free( &bin );
bibl_freeparams( &lp );
return BIBL_OK;
}
static FILE *
singlerefname( fields *reffields, long nref, int mode )
{
char outfile[2048];
char suffix[5] = "xml";
FILE *fp;
long count;
int found;
if ( mode==BIBL_ADSABSOUT ) strcpy( suffix, "ads" );
else if ( mode==BIBL_BIBTEXOUT ) strcpy( suffix, "bib" );
else if ( mode==BIBL_ENDNOTEOUT ) strcpy( suffix, "end" );
else if ( mode==BIBL_ISIOUT ) strcpy( suffix, "isi" );
else if ( mode==BIBL_MODSOUT ) strcpy( suffix, "xml" );
else if ( mode==BIBL_RISOUT ) strcpy( suffix, "ris" );
else if ( mode==BIBL_WORD2007OUT ) strcpy( suffix, "xml" );
found = fields_find( reffields, "REFNUM", LEVEL_MAIN );
/* find new filename based on reference */
if ( found!=-1 ) {
sprintf( outfile,"%s.%s",reffields->data[found].data, suffix );
} else sprintf( outfile,"%ld.%s",nref, suffix );
count = 0;
fp = fopen( outfile, "r" );
while ( fp ) {
fclose(fp);
count++;
if ( count==60000 ) return NULL;
if ( found!=-1 )
sprintf( outfile, "%s_%ld.%s",
reffields->data[found].data, count, suffix );
else sprintf( outfile,"%ld_%ld.%s",nref, count, suffix );
fp = fopen( outfile, "r" );
}
return fopen( outfile, "w" );
}
static int
bibl_writeeachfp( FILE *fp, bibl *b, param *p )
{
int status;
long i;
for ( i=0; i<b->nrefs; ++i ) {
fp = singlerefname( b->ref[i], i, p->writeformat );
if ( !fp ) return BIBL_ERR_CANTOPEN;
if ( p->headerf ) p->headerf( fp, p );
status = p->writef( b->ref[i], fp, p, i );
if ( p->footerf ) p->footerf( fp );
fclose( fp );
if ( status!=BIBL_OK ) return status;
}
return BIBL_OK;
}
static int
bibl_writefp( FILE *fp, bibl *b, param *p )
{
int status = BIBL_OK;
long i;
if ( p->headerf ) p->headerf( fp, p );
for ( i=0; i<b->nrefs; ++i ) {
status = p->writef( b->ref[i], fp, p, i );
if ( status!=BIBL_OK ) break;
}
if ( p->footerf ) p->footerf( fp );
return status;
}
int
bibl_write( bibl *b, FILE *fp, param *p )
{
int status;
param lp;
if ( !b ) return BIBL_ERR_BADINPUT;
if ( !p ) return BIBL_ERR_BADINPUT;
if ( bibl_illegaloutmode( p->writeformat ) ) return BIBL_ERR_BADINPUT;
if ( !fp && !p->singlerefperfile ) return BIBL_ERR_BADINPUT;
status = bibl_setwriteparams( &lp, p );
if ( status!=BIBL_OK ) return status;
status = bibl_fixcharsets( b, &lp );
if ( status!=BIBL_OK ) return status;
if ( debug_set( p ) ) {
report_params( stderr, "bibl_write", &lp );
fflush( stdout );
fprintf( stderr, "-------------------start for bibl_write\n");
bibl_verbose0( b );
fprintf( stderr, "-------------------end for bibl_write\n" );
fflush( stderr );
}
if ( p->singlerefperfile ) status = bibl_writeeachfp( fp, b, &lp );
else status = bibl_writefp( fp, b, &lp );
bibl_freeparams( &lp );
return status;
}