/* movstat/mvacc.c * * Moving window mean/variance accumulator - based on a modification * to Welford's algorithm, discussed here: * * https://stackoverflow.com/a/6664212 * * Copyright (C) 2018 Patrick Alken * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 3 of the License, or (at * your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. */ #include #include #include #include #include typedef double ringbuf_type_t; #include "ringbuf.c" typedef struct { size_t n; /* window size */ size_t k; /* number of samples currently in window */ double mean; /* current window mean */ double M2; /* current window M2 */ ringbuf *rbuf; /* ring buffer storing current window */ } mvacc_state_t; static size_t mvacc_size(const size_t n) { size_t size = 0; size += sizeof(mvacc_state_t); size += ringbuf_size(n); return size; } static int mvacc_init(const size_t n, void * vstate) { mvacc_state_t * state = (mvacc_state_t *) vstate; state->n = n; state->k = 0; state->mean = 0.0; state->M2 = 0.0; state->rbuf = (ringbuf *) ((unsigned char *) vstate + sizeof(mvacc_state_t)); ringbuf_init(n, state->rbuf); return GSL_SUCCESS; } static int mvacc_insert(const double x, void * vstate) { mvacc_state_t * state = (mvacc_state_t *) vstate; if (ringbuf_is_full(state->rbuf)) { /* remove oldest window element and add new one */ double old = ringbuf_peek_back(state->rbuf); double prev_mean = state->mean; state->mean += (x - old) / (double) state->n; state->M2 += ((old - prev_mean) + (x - state->mean)) * (x - old); } else { double delta = x - state->mean; /* * Welford algorithm: * * mu_new = mu_old + (x - mu_old) / n * M2_new = M2_old + (x - mu_old) * (x - mu_new) */ ++(state->k); state->mean += delta / (double) state->k; state->M2 += delta * (x - state->mean); } /* add new element to ring buffer */ ringbuf_insert(x, state->rbuf); return GSL_SUCCESS; } static int mvacc_delete(void * vstate) { mvacc_state_t * state = (mvacc_state_t *) vstate; if (!ringbuf_is_empty(state->rbuf)) { if (state->k > 1) { /* * mu_new = mu_old + (mu_old - x_old) / (n - 1) * M2_new = M2_old - (mu_old - x_old) * (mu_new - x_old) */ double old = ringbuf_peek_back(state->rbuf); double prev_mean = state->mean; double delta = prev_mean - old; state->mean += delta / (state->k - 1.0); state->M2 -= delta * (state->mean - old); } else if (state->k == 1) { state->mean = 0.0; state->M2 = 0.0; } ringbuf_pop_back(state->rbuf); --(state->k); } return GSL_SUCCESS; } static int mvacc_mean(void * params, double * result, const void * vstate) { const mvacc_state_t * state = (const mvacc_state_t *) vstate; (void) params; *result = state->mean; return GSL_SUCCESS; } static int mvacc_variance(void * params, double * result, const void * vstate) { const mvacc_state_t * state = (const mvacc_state_t *) vstate; (void) params; if (state->k < 2) *result = 0.0; else *result = state->M2 / (state->k - 1.0); return GSL_SUCCESS; } static int mvacc_sd(void * params, double * result, const void * vstate) { double variance; int status = mvacc_variance(params, &variance, vstate); *result = sqrt(variance); return status; } static const gsl_movstat_accum mean_accum_type = { mvacc_size, mvacc_init, mvacc_insert, mvacc_delete, mvacc_mean }; const gsl_movstat_accum *gsl_movstat_accum_mean = &mean_accum_type; static const gsl_movstat_accum variance_accum_type = { mvacc_size, mvacc_init, mvacc_insert, mvacc_delete, mvacc_variance }; const gsl_movstat_accum *gsl_movstat_accum_variance = &variance_accum_type; static const gsl_movstat_accum sd_accum_type = { mvacc_size, mvacc_init, mvacc_insert, mvacc_delete, mvacc_sd }; const gsl_movstat_accum *gsl_movstat_accum_sd = &sd_accum_type;