/* rstat/rstat.c * * Copyright (C) 2015 Patrick Alken * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 3 of the License, or (at * your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. */ #include #include #include #include #include #include gsl_rstat_workspace * gsl_rstat_alloc(void) { gsl_rstat_workspace *w; w = calloc(1, sizeof(gsl_rstat_workspace)); if (w == 0) { GSL_ERROR_NULL ("failed to allocate space for workspace", GSL_ENOMEM); } w->median_workspace_p = gsl_rstat_quantile_alloc(0.5); if (w->median_workspace_p == 0) { GSL_ERROR_NULL ("failed to allocate space for median workspace", GSL_ENOMEM); } gsl_rstat_reset(w); return w; } /* gsl_rstat_alloc() */ void gsl_rstat_free(gsl_rstat_workspace *w) { if (w->median_workspace_p) gsl_rstat_quantile_free(w->median_workspace_p); free(w); } /* gsl_rstat_free() */ size_t gsl_rstat_n(const gsl_rstat_workspace *w) { return w->n; } /* gsl_rstat_n() */ /* add a data point to the running totals */ int gsl_rstat_add(const double x, gsl_rstat_workspace *w) { double delta = x - w->mean; double delta_n, delta_nsq, term1, n; /* update min and max */ if (w->n == 0) { w->min = x; w->max = x; } else { if (x < w->min) w->min = x; if (x > w->max) w->max = x; } /* update mean and variance */ n = (double) ++(w->n); delta_n = delta / n; delta_nsq = delta_n * delta_n; term1 = delta * delta_n * (n - 1.0); w->mean += delta_n; w->M4 += term1 * delta_nsq * (n * n - 3.0 * n + 3.0) + 6.0 * delta_nsq * w->M2 - 4.0 * delta_n * w->M3; w->M3 += term1 * delta_n * (n - 2.0) - 3.0 * delta_n * w->M2; w->M2 += term1; /* update median */ gsl_rstat_quantile_add(x, w->median_workspace_p); return GSL_SUCCESS; } /* gsl_rstat_add() */ double gsl_rstat_min(const gsl_rstat_workspace *w) { return w->min; } /* gsl_rstat_min() */ double gsl_rstat_max(const gsl_rstat_workspace *w) { return w->max; } /* gsl_rstat_max() */ double gsl_rstat_mean(const gsl_rstat_workspace *w) { return w->mean; } /* gsl_rstat_mean() */ double gsl_rstat_variance(const gsl_rstat_workspace *w) { if (w->n > 1) { double n = (double) w->n; return (w->M2 / (n - 1.0)); } else return 0.0; } /* gsl_rstat_variance() */ double gsl_rstat_sd(const gsl_rstat_workspace *w) { double var = gsl_rstat_variance(w); return (sqrt(var)); } /* gsl_rstat_sd() */ double gsl_rstat_rms(const gsl_rstat_workspace *w) { double rms = 0.0; if (w->n > 0) { double mean = gsl_rstat_mean(w); double sigma = gsl_rstat_sd(w); double n = (double) w->n; double a = sqrt((n - 1.0) / n); rms = gsl_hypot(mean, a * sigma); } return rms; } /* standard deviation of the mean: sigma / sqrt(n) */ double gsl_rstat_sd_mean(const gsl_rstat_workspace *w) { if (w->n > 0) { double sd = gsl_rstat_sd(w); return (sd / sqrt((double) w->n)); } else return 0.0; } /* gsl_rstat_sd_mean() */ double gsl_rstat_median(gsl_rstat_workspace *w) { return gsl_rstat_quantile_get(w->median_workspace_p); } double gsl_rstat_skew(const gsl_rstat_workspace *w) { if (w->n > 0) { double n = (double) w->n; double fac = pow(n - 1.0, 1.5) / n; return ((fac * w->M3) / pow(w->M2, 1.5)); } else return 0.0; } /* gsl_rstat_skew() */ double gsl_rstat_kurtosis(const gsl_rstat_workspace *w) { if (w->n > 0) { double n = (double) w->n; double fac = ((n - 1.0) / n) * (n - 1.0); return ((fac * w->M4) / (w->M2 * w->M2) - 3.0); } else return 0.0; } /* gsl_rstat_kurtosis() */ int gsl_rstat_reset(gsl_rstat_workspace *w) { int status; w->min = 0.0; w->max = 0.0; w->mean = 0.0; w->M2 = 0.0; w->M3 = 0.0; w->M4 = 0.0; w->n = 0; status = gsl_rstat_quantile_reset(w->median_workspace_p); return status; } /* gsl_rstat_reset() */