/* movstat/mmacc.c * * Copyright (C) 2018 Patrick Alken * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 3 of the License, or (at * your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. */ /* * This module contains routines for tracking minimum/maximum values of a * moving fixed-sized window. It is based on the algorithm of: * * [1] Daniel Lemire, Streaming Maximum-Minimum Filter Using No More than Three Comparisons per Element, * Nordic Journal of Computing, Volume 13, Number 4, pages 328-339, 2006 * * Also available as a preprint here: https://arxiv.org/abs/cs/0610046 */ #include #include #include #include #include #include typedef double mmacc_type_t; typedef mmacc_type_t ringbuf_type_t; #include "deque.c" #include "ringbuf.c" typedef struct { size_t n; /* window size */ size_t k; /* number of samples in current window */ mmacc_type_t xprev; /* previous sample added to window */ ringbuf *rbuf; /* ring buffer storing current window, size n */ deque *minque; /* double-ended queue of min values (L) */ deque *maxque; /* double-ended queue of max values (U) */ } mmacc_state_t; static size_t mmacc_size(const size_t n); static int mmacc_init(const size_t n, void * vstate); static int mmacc_insert(const mmacc_type_t x, void * vstate); static int mmacc_delete(void * vstate); static int mmacc_min(void * params, mmacc_type_t * result, const void * vstate); static int mmacc_max(void * params, mmacc_type_t * result, const void * vstate); static int mmacc_minmax(void * params, mmacc_type_t * result, const void * vstate); static size_t mmacc_size(const size_t n) { size_t size = 0; size += sizeof(mmacc_state_t); size += ringbuf_size(n); /* rbuf */ size += 2 * deque_size(n + 1); /* minque/maxque */ return size; } static int mmacc_init(const size_t n, void * vstate) { mmacc_state_t * state = (mmacc_state_t *) vstate; state->n = n; state->k = 0; state->xprev = 0.0; state->rbuf = (ringbuf *) ((unsigned char *) vstate + sizeof(mmacc_state_t)); state->minque = (deque *) ((unsigned char *) state->rbuf + ringbuf_size(n)); state->maxque = (deque *) ((unsigned char *) state->minque + deque_size(n + 1)); ringbuf_init(n, state->rbuf); deque_init(n + 1, state->minque); deque_init(n + 1, state->maxque); return GSL_SUCCESS; } static int mmacc_insert(const mmacc_type_t x, void * vstate) { mmacc_state_t * state = (mmacc_state_t *) vstate; int head, tail; if (state->k == 0) { /* first sample */ ringbuf_insert(x, state->rbuf); head = state->rbuf->head; deque_push_back(head, state->maxque); deque_push_back(head, state->minque); } else { if (x > state->xprev) { deque_pop_back(state->maxque); while (!deque_is_empty(state->maxque)) { if (x <= state->rbuf->array[deque_peek_back(state->maxque)]) break; deque_pop_back(state->maxque); } } else { deque_pop_back(state->minque); while (!deque_is_empty(state->minque)) { if (x >= state->rbuf->array[deque_peek_back(state->minque)]) break; deque_pop_back(state->minque); } } /* store new sample into ring buffer */ tail = state->rbuf->tail; ringbuf_insert(x, state->rbuf); head = state->rbuf->head; deque_push_back(head, state->maxque); deque_push_back(head, state->minque); if (state->k == state->n) { /* * window is full - check if oldest window element is a global minimum/maximum * of current window - if so pop it from U/L queues; * the check head != tail ensures there is more than 1 element in the * queue, do not pop if queue has only 1 element, since this element would * be the newest sample */ if (state->maxque->head != state->maxque->tail && tail == deque_peek_front(state->maxque)) deque_pop_front(state->maxque); else if (state->minque->head != state->minque->tail && tail == deque_peek_front(state->minque)) deque_pop_front(state->minque); } } if (state->k < state->n) ++(state->k); state->xprev = x; return GSL_SUCCESS; } static int mmacc_delete(void * vstate) { mmacc_state_t * state = (mmacc_state_t *) vstate; if (state->k > 0) { /* * check if oldest window element is a global minimum/maximum; if so * pop it from U/L queues */ if (state->rbuf->tail == deque_peek_front(state->maxque)) deque_pop_front(state->maxque); else if (state->rbuf->tail == deque_peek_front(state->minque)) deque_pop_front(state->minque); /* remove oldest element from ring buffer */ ringbuf_pop_back(state->rbuf); --(state->k); } return GSL_SUCCESS; } static int mmacc_min(void * params, mmacc_type_t * result, const void * vstate) { const mmacc_state_t * state = (const mmacc_state_t *) vstate; (void) params; if (state->k == 0) { GSL_ERROR ("no samples yet added to workspace", GSL_EINVAL); } else { *result = state->rbuf->array[deque_peek_front(state->minque)]; return GSL_SUCCESS; } } static int mmacc_max(void * params, mmacc_type_t * result, const void * vstate) { const mmacc_state_t * state = (const mmacc_state_t *) vstate; (void) params; if (state->k == 0) { GSL_ERROR ("no samples yet added to workspace", GSL_EINVAL); } else { *result = state->rbuf->array[deque_peek_front(state->maxque)]; return GSL_SUCCESS; } } static int mmacc_minmax(void * params, mmacc_type_t * result, const void * vstate) { const mmacc_state_t * state = (const mmacc_state_t *) vstate; (void) params; if (state->k == 0) { GSL_ERROR ("no samples yet added to workspace", GSL_EINVAL); } else { result[0] = state->rbuf->array[deque_peek_front(state->minque)]; result[1] = state->rbuf->array[deque_peek_front(state->maxque)]; return GSL_SUCCESS; } } static const gsl_movstat_accum min_accum_type = { mmacc_size, mmacc_init, mmacc_insert, mmacc_delete, mmacc_min }; const gsl_movstat_accum *gsl_movstat_accum_min = &min_accum_type; static const gsl_movstat_accum max_accum_type = { mmacc_size, mmacc_init, mmacc_insert, mmacc_delete, mmacc_max }; const gsl_movstat_accum *gsl_movstat_accum_max = &max_accum_type; static const gsl_movstat_accum minmax_accum_type = { mmacc_size, mmacc_init, mmacc_insert, mmacc_delete, mmacc_minmax }; const gsl_movstat_accum *gsl_movstat_accum_minmax = &minmax_accum_type;