Blame siman/siman.c

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/* siman/siman.c
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 * 
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 * Copyright (C) 2007 Brian Gough
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 * Copyright (C) 1996, 1997, 1998, 1999, 2000 Mark Galassi
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 * 
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 3 of the License, or (at
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 * your option) any later version.
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 * 
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 * This program is distributed in the hope that it will be useful, but
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 * WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
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 * General Public License for more details.
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 * 
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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 */
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#include <config.h>
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#include <stdio.h>
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#include <math.h>
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#include <stdlib.h>
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#include <string.h>
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#include <assert.h>
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#include <gsl/gsl_machine.h>
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#include <gsl/gsl_rng.h>
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#include <gsl/gsl_siman.h>
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static inline double
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boltzmann(double E, double new_E, double T, gsl_siman_params_t *params)
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{
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  double x = -(new_E - E) / (params->k * T);
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  /* avoid underflow errors for large uphill steps */
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  return (x < GSL_LOG_DBL_MIN) ? 0.0 : exp(x);
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}
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static inline void
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copy_state(void *src, void *dst, size_t size, gsl_siman_copy_t copyfunc)
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{
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  if (copyfunc) {
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    copyfunc(src, dst);
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  } else {
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    memcpy(dst, src, size);
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  }
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}
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/* implementation of a basic simulated annealing algorithm */
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void 
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gsl_siman_solve (const gsl_rng * r, void *x0_p, gsl_siman_Efunc_t Ef,
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                 gsl_siman_step_t take_step,
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                 gsl_siman_metric_t distance,
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                 gsl_siman_print_t print_position,
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                 gsl_siman_copy_t copyfunc,
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                 gsl_siman_copy_construct_t copy_constructor,
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                 gsl_siman_destroy_t destructor,
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                 size_t element_size,
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                 gsl_siman_params_t params)
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{
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  void *x, *new_x, *best_x;
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  double E, new_E, best_E;
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  int i;
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  double T, T_factor;
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  int n_evals = 1, n_iter = 0, n_accepts, n_rejects, n_eless;
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  /* this function requires that either the dynamic functions (copy,
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     copy_constructor and destrcutor) are passed, or that an element
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     size is given */
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  assert((copyfunc != NULL && copy_constructor != NULL && destructor != NULL)
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         || (element_size != 0));
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  distance = 0 ; /* This parameter is not currently used */
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  E = Ef(x0_p);
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  if (copyfunc) {
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    x = copy_constructor(x0_p);
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    new_x = copy_constructor(x0_p);
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    best_x = copy_constructor(x0_p);
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  } else {
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    x = (void *) malloc (element_size);
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    memcpy (x, x0_p, element_size);
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    new_x = (void *) malloc (element_size);
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    best_x =  (void *) malloc (element_size);
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    memcpy (best_x, x0_p, element_size);
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  }
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  best_E = E;
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  T = params.t_initial;
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  T_factor = 1.0 / params.mu_t;
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  if (print_position) {
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    printf ("#-iter  #-evals   temperature     position   energy\n");
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  }
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  while (1) {
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    n_accepts = 0;
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    n_rejects = 0;
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    n_eless = 0;
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    for (i = 0; i < params.iters_fixed_T; ++i) {
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      copy_state(x, new_x, element_size, copyfunc);
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      take_step (r, new_x, params.step_size);
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      new_E = Ef (new_x);
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      if(new_E <= best_E){
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        if (copyfunc) {
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          copyfunc(new_x,best_x);
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        } else {
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          memcpy (best_x, new_x, element_size);
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        }
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        best_E=new_E;
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      }
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      ++n_evals;                /* keep track of Ef() evaluations */
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      /* now take the crucial step: see if the new point is accepted
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         or not, as determined by the boltzmann probability */
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      if (new_E < E) {
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	if (new_E < best_E) {
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	  copy_state(new_x, best_x, element_size, copyfunc);
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	  best_E = new_E;
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	}
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        /* yay! take a step */
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	copy_state(new_x, x, element_size, copyfunc);
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        E = new_E;
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        ++n_eless;
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      } else if (gsl_rng_uniform(r) < boltzmann(E, new_E, T, &params)) {
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        /* yay! take a step */
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	copy_state(new_x, x, element_size, copyfunc);
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        E = new_E;
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        ++n_accepts;
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      } else {
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        ++n_rejects;
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      }
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    }
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    if (print_position) {
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      /* see if we need to print stuff as we go */
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      /*       printf("%5d %12g %5d %3d %3d %3d", n_iter, T, n_evals, */
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      /*           100*n_eless/n_steps, 100*n_accepts/n_steps, */
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      /*           100*n_rejects/n_steps); */
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      printf ("%5d   %7d  %12g", n_iter, n_evals, T);
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      print_position (x);
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      printf ("  %12g  %12g\n", E, best_E);
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    }
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    /* apply the cooling schedule to the temperature */
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    /* FIXME: I should also introduce a cooling schedule for the iters */
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    T *= T_factor;
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    ++n_iter;
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    if (T < params.t_min) {
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      break;
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    }
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  }
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  /* at the end, copy the result onto the initial point, so we pass it
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     back to the caller */
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  copy_state(best_x, x0_p, element_size, copyfunc);
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  if (copyfunc) {
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    destructor(x);
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    destructor(new_x);
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    destructor(best_x);
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  } else {
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    free (x);
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    free (new_x);
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    free (best_x);
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  }
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}
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/* implementation of a simulated annealing algorithm with many tries */
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void 
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gsl_siman_solve_many (const gsl_rng * r, void *x0_p, gsl_siman_Efunc_t Ef,
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                      gsl_siman_step_t take_step,
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                      gsl_siman_metric_t distance,
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                      gsl_siman_print_t print_position,
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                      size_t element_size,
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                      gsl_siman_params_t params)
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{
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  /* the new set of trial points, and their energies and probabilities */
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  void *x, *new_x;
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  double *energies, *probs, *sum_probs;
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  double Ex;                    /* energy of the chosen point */
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  double T, T_factor;           /* the temperature and a step multiplier */
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  int i;
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  double u;                     /* throw the die to choose a new "x" */
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  int n_iter;
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  if (print_position) {
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    printf ("#-iter    temperature       position");
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    printf ("         delta_pos        energy\n");
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  }
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  x = (void *) malloc (params.n_tries * element_size);
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  new_x = (void *) malloc (params.n_tries * element_size);
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  energies = (double *) malloc (params.n_tries * sizeof (double));
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  probs = (double *) malloc (params.n_tries * sizeof (double));
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  sum_probs = (double *) malloc (params.n_tries * sizeof (double));
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  T = params.t_initial;
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  T_factor = 1.0 / params.mu_t;
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  memcpy (x, x0_p, element_size);
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  n_iter = 0;
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  while (1)
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    {
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      Ex = Ef (x);
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      for (i = 0; i < params.n_tries - 1; ++i)
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        {                       /* only go to N_TRIES-2 */
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          /* center the new_x[] around x, then pass it to take_step() */
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          sum_probs[i] = 0;
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          memcpy ((char *)new_x + i * element_size, x, element_size);
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          take_step (r, (char *)new_x + i * element_size, params.step_size);
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          energies[i] = Ef ((char *)new_x + i * element_size);
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          probs[i] = boltzmann(Ex, energies[i], T, &params);
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        }
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      /* now add in the old value of "x", so it is a contendor */
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      memcpy ((char *)new_x + (params.n_tries - 1) * element_size, x, element_size);
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      energies[params.n_tries - 1] = Ex;
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      probs[params.n_tries - 1] = boltzmann(Ex, energies[i], T, &params);
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      /* now throw biased die to see which new_x[i] we choose */
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      sum_probs[0] = probs[0];
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      for (i = 1; i < params.n_tries; ++i)
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        {
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          sum_probs[i] = sum_probs[i - 1] + probs[i];
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        }
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      u = gsl_rng_uniform (r) * sum_probs[params.n_tries - 1];
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      for (i = 0; i < params.n_tries; ++i)
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        {
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          if (u < sum_probs[i])
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            {
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              memcpy (x, (char *) new_x + i * element_size, element_size);
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              break;
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            }
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        }
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      if (print_position)
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        {
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          printf ("%5d\t%12g\t", n_iter, T);
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          print_position (x);
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          printf ("\t%12g\t%12g\n", distance (x, x0_p), Ex);
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        }
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      T *= T_factor;
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      ++n_iter;
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      if (T < params.t_min)
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	{
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	  break;
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        }
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    }
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  /* now return the value via x0_p */
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  memcpy (x0_p, x, element_size);
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  /*  printf("the result is: %g (E=%g)\n", x, Ex); */
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  free (x);
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  free (new_x);
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  free (energies);
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  free (probs);
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  free (sum_probs);
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}