|
Packit |
67cb25 |
/* randist/shuffle.c
|
|
Packit |
67cb25 |
*
|
|
Packit |
67cb25 |
* Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 James Theiler, Brian Gough
|
|
Packit |
67cb25 |
*
|
|
Packit |
67cb25 |
* This program is free software; you can redistribute it and/or modify
|
|
Packit |
67cb25 |
* it under the terms of the GNU General Public License as published by
|
|
Packit |
67cb25 |
* the Free Software Foundation; either version 3 of the License, or (at
|
|
Packit |
67cb25 |
* your option) any later version.
|
|
Packit |
67cb25 |
*
|
|
Packit |
67cb25 |
* This program is distributed in the hope that it will be useful, but
|
|
Packit |
67cb25 |
* WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
Packit |
67cb25 |
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
|
Packit |
67cb25 |
* General Public License for more details.
|
|
Packit |
67cb25 |
*
|
|
Packit |
67cb25 |
* You should have received a copy of the GNU General Public License
|
|
Packit |
67cb25 |
* along with this program; if not, write to the Free Software
|
|
Packit |
67cb25 |
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
|
|
Packit |
67cb25 |
*/
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
#include <config.h>
|
|
Packit |
67cb25 |
#include <stdlib.h>
|
|
Packit |
67cb25 |
#include <math.h>
|
|
Packit |
67cb25 |
#include <gsl/gsl_rng.h>
|
|
Packit |
67cb25 |
#include <gsl/gsl_randist.h>
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* Inline swap and copy functions for moving objects around */
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static inline
|
|
Packit |
67cb25 |
void swap (void * base, size_t size, size_t i, size_t j)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
register char * a = size * i + (char *) base ;
|
|
Packit |
67cb25 |
register char * b = size * j + (char *) base ;
|
|
Packit |
67cb25 |
register size_t s = size ;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
if (i == j)
|
|
Packit |
67cb25 |
return ;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
do
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
char tmp = *a;
|
|
Packit |
67cb25 |
*a++ = *b;
|
|
Packit |
67cb25 |
*b++ = tmp;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
while (--s > 0);
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static inline void
|
|
Packit |
67cb25 |
copy (void * dest, size_t i, void * src, size_t j, size_t size)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
register char * a = size * i + (char *) dest ;
|
|
Packit |
67cb25 |
register char * b = size * j + (char *) src ;
|
|
Packit |
67cb25 |
register size_t s = size ;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
do
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
*a++ = *b++;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
while (--s > 0);
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* Randomly permute (shuffle) N indices
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
Supply an array x[N] with nmemb members, each of size size and on
|
|
Packit |
67cb25 |
return it will be shuffled into a random order. The algorithm is
|
|
Packit |
67cb25 |
from Knuth, SemiNumerical Algorithms, v2, p139, who cites Moses and
|
|
Packit |
67cb25 |
Oakford, and Durstenfeld */
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
void
|
|
Packit |
67cb25 |
gsl_ran_shuffle (const gsl_rng * r, void * base, size_t n, size_t size)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
size_t i ;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
for (i = n - 1; i > 0; i--)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
size_t j = gsl_rng_uniform_int(r, i+1); /* originally (i + 1) * gsl_rng_uniform (r) */
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
swap (base, size, i, j) ;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
int
|
|
Packit |
67cb25 |
gsl_ran_choose (const gsl_rng * r, void * dest, size_t k, void * src,
|
|
Packit |
67cb25 |
size_t n, size_t size)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
size_t i, j = 0;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* Choose k out of n items, return an array x[] of the k items.
|
|
Packit |
67cb25 |
These items will prevserve the relative order of the original
|
|
Packit |
67cb25 |
input -- you can use shuffle() to randomize the output if you
|
|
Packit |
67cb25 |
wish */
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
if (k > n)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
GSL_ERROR ("k is greater than n, cannot sample more than n items",
|
|
Packit |
67cb25 |
GSL_EINVAL) ;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
for (i = 0; i < n && j < k; i++)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
if ((n - i) * gsl_rng_uniform (r) < k - j)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
copy (dest, j, src, i, size) ;
|
|
Packit |
67cb25 |
j++ ;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
return GSL_SUCCESS;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
void
|
|
Packit |
67cb25 |
gsl_ran_sample (const gsl_rng * r, void * dest, size_t k, void * src,
|
|
Packit |
67cb25 |
size_t n, size_t size)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
size_t i, j = 0;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* Choose k out of n items, with replacement */
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
for (i = 0; i < k; i++)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
j = gsl_rng_uniform_int (r, n); /* originally n * gsl_rng_uniform (r) */
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
copy (dest, i, src, j, size) ;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
}
|