Blame randist/shuffle.c

Packit 67cb25
/* randist/shuffle.c
Packit 67cb25
 * 
Packit 67cb25
 * Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 James Theiler, Brian Gough
Packit 67cb25
 * 
Packit 67cb25
 * This program is free software; you can redistribute it and/or modify
Packit 67cb25
 * it under the terms of the GNU General Public License as published by
Packit 67cb25
 * the Free Software Foundation; either version 3 of the License, or (at
Packit 67cb25
 * your option) any later version.
Packit 67cb25
 * 
Packit 67cb25
 * This program is distributed in the hope that it will be useful, but
Packit 67cb25
 * WITHOUT ANY WARRANTY; without even the implied warranty of
Packit 67cb25
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
Packit 67cb25
 * General Public License for more details.
Packit 67cb25
 * 
Packit 67cb25
 * You should have received a copy of the GNU General Public License
Packit 67cb25
 * along with this program; if not, write to the Free Software
Packit 67cb25
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
Packit 67cb25
 */
Packit 67cb25
Packit 67cb25
#include <config.h>
Packit 67cb25
#include <stdlib.h>
Packit 67cb25
#include <math.h>
Packit 67cb25
#include <gsl/gsl_rng.h>
Packit 67cb25
#include <gsl/gsl_randist.h>
Packit 67cb25
Packit 67cb25
/* Inline swap and copy functions for moving objects around */
Packit 67cb25
Packit 67cb25
static inline 
Packit 67cb25
void swap (void * base, size_t size, size_t i, size_t j)
Packit 67cb25
{
Packit 67cb25
  register char * a = size * i + (char *) base ;
Packit 67cb25
  register char * b = size * j + (char *) base ;
Packit 67cb25
  register size_t s = size ;
Packit 67cb25
Packit 67cb25
  if (i == j)
Packit 67cb25
    return ;
Packit 67cb25
  
Packit 67cb25
  do                                            
Packit 67cb25
    {                                           
Packit 67cb25
      char tmp = *a;                            
Packit 67cb25
      *a++ = *b;                                
Packit 67cb25
      *b++ = tmp;                               
Packit 67cb25
    } 
Packit 67cb25
  while (--s > 0);                              
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
static inline void 
Packit 67cb25
copy (void * dest, size_t i, void * src, size_t j, size_t size)
Packit 67cb25
{
Packit 67cb25
  register char * a = size * i + (char *) dest ;
Packit 67cb25
  register char * b = size * j + (char *) src ;
Packit 67cb25
  register size_t s = size ;
Packit 67cb25
  
Packit 67cb25
  do                                            
Packit 67cb25
    {                                           
Packit 67cb25
      *a++ = *b++;                              
Packit 67cb25
    } 
Packit 67cb25
  while (--s > 0);                              
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
/* Randomly permute (shuffle) N indices
Packit 67cb25
Packit 67cb25
   Supply an array x[N] with nmemb members, each of size size and on
Packit 67cb25
   return it will be shuffled into a random order.  The algorithm is
Packit 67cb25
   from Knuth, SemiNumerical Algorithms, v2, p139, who cites Moses and
Packit 67cb25
   Oakford, and Durstenfeld */
Packit 67cb25
Packit 67cb25
void
Packit 67cb25
gsl_ran_shuffle (const gsl_rng * r, void * base, size_t n, size_t size)
Packit 67cb25
{
Packit 67cb25
  size_t i ;
Packit 67cb25
Packit 67cb25
  for (i = n - 1; i > 0; i--)
Packit 67cb25
    {
Packit 67cb25
      size_t j = gsl_rng_uniform_int(r, i+1); /* originally (i + 1) * gsl_rng_uniform (r) */
Packit 67cb25
Packit 67cb25
      swap (base, size, i, j) ;
Packit 67cb25
    }
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
int
Packit 67cb25
gsl_ran_choose (const gsl_rng * r, void * dest, size_t k, void * src, 
Packit 67cb25
                 size_t n, size_t size)
Packit 67cb25
{
Packit 67cb25
  size_t i, j = 0;
Packit 67cb25
Packit 67cb25
  /* Choose k out of n items, return an array x[] of the k items.
Packit 67cb25
     These items will prevserve the relative order of the original
Packit 67cb25
     input -- you can use shuffle() to randomize the output if you
Packit 67cb25
     wish */
Packit 67cb25
Packit 67cb25
  if (k > n)
Packit 67cb25
    {
Packit 67cb25
      GSL_ERROR ("k is greater than n, cannot sample more than n items",
Packit 67cb25
                 GSL_EINVAL) ;
Packit 67cb25
    }
Packit 67cb25
Packit 67cb25
  for (i = 0; i < n && j < k; i++)
Packit 67cb25
    {
Packit 67cb25
      if ((n - i) * gsl_rng_uniform (r) < k - j)
Packit 67cb25
        {
Packit 67cb25
          copy (dest, j, src, i, size) ;
Packit 67cb25
          j++ ;
Packit 67cb25
        }
Packit 67cb25
    }
Packit 67cb25
Packit 67cb25
  return GSL_SUCCESS;
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
void
Packit 67cb25
gsl_ran_sample (const gsl_rng * r, void * dest, size_t k, void * src, 
Packit 67cb25
                size_t n, size_t size)
Packit 67cb25
{
Packit 67cb25
  size_t i, j = 0;
Packit 67cb25
Packit 67cb25
  /* Choose k out of n items, with replacement */
Packit 67cb25
Packit 67cb25
  for (i = 0; i < k; i++)
Packit 67cb25
    {
Packit 67cb25
      j = gsl_rng_uniform_int (r, n);  /* originally n * gsl_rng_uniform (r) */
Packit 67cb25
Packit 67cb25
      copy (dest, i, src, j, size) ;
Packit 67cb25
    }
Packit 67cb25
}