Blame movstat/qqracc.c

Packit 67cb25
/* movstat/qqracc.c
Packit 67cb25
 *
Packit 67cb25
 * Moving window QQR accumulator
Packit 67cb25
 * 
Packit 67cb25
 * Copyright (C) 2018 Patrick Alken
Packit 67cb25
 * 
Packit 67cb25
 * This program is free software; you can redistribute it and/or modify
Packit 67cb25
 * it under the terms of the GNU General Public License as published by
Packit 67cb25
 * the Free Software Foundation; either version 3 of the License, or (at
Packit 67cb25
 * your option) any later version.
Packit 67cb25
 * 
Packit 67cb25
 * This program is distributed in the hope that it will be useful, but
Packit 67cb25
 * WITHOUT ANY WARRANTY; without even the implied warranty of
Packit 67cb25
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
Packit 67cb25
 * General Public License for more details.
Packit 67cb25
 * 
Packit 67cb25
 * You should have received a copy of the GNU General Public License
Packit 67cb25
 * along with this program; if not, write to the Free Software
Packit 67cb25
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
Packit 67cb25
 */
Packit 67cb25
Packit 67cb25
#include <config.h>
Packit 67cb25
#include <gsl/gsl_math.h>
Packit 67cb25
#include <gsl/gsl_vector.h>
Packit 67cb25
#include <gsl/gsl_errno.h>
Packit 67cb25
#include <gsl/gsl_movstat.h>
Packit 67cb25
#include <gsl/gsl_sort.h>
Packit 67cb25
#include <gsl/gsl_statistics.h>
Packit 67cb25
Packit 67cb25
typedef double qqracc_type_t;
Packit 67cb25
typedef qqracc_type_t ringbuf_type_t;
Packit 67cb25
Packit 67cb25
#include "ringbuf.c"
Packit 67cb25
Packit 67cb25
typedef struct
Packit 67cb25
{
Packit 67cb25
  qqracc_type_t *window; /* linear array for current window */
Packit 67cb25
  ringbuf *rbuf;         /* ring buffer storing current window */
Packit 67cb25
} qqracc_state_t;
Packit 67cb25
Packit 67cb25
static size_t
Packit 67cb25
qqracc_size(const size_t n)
Packit 67cb25
{
Packit 67cb25
  size_t size = 0;
Packit 67cb25
Packit 67cb25
  size += sizeof(qqracc_state_t);
Packit 67cb25
  size += n * sizeof(qqracc_type_t);
Packit 67cb25
  size += ringbuf_size(n);
Packit 67cb25
Packit 67cb25
  return size;
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
static int
Packit 67cb25
qqracc_init(const size_t n, void * vstate)
Packit 67cb25
{
Packit 67cb25
  qqracc_state_t * state = (qqracc_state_t *) vstate;
Packit 67cb25
Packit 67cb25
  state->window = (qqracc_type_t *) ((unsigned char *) vstate + sizeof(qqracc_state_t));
Packit 67cb25
  state->rbuf = (ringbuf *) ((unsigned char *) state->window + n * sizeof(qqracc_type_t));
Packit 67cb25
Packit 67cb25
  ringbuf_init(n, state->rbuf);
Packit 67cb25
Packit 67cb25
  return GSL_SUCCESS;
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
static int
Packit 67cb25
qqracc_insert(const qqracc_type_t x, void * vstate)
Packit 67cb25
{
Packit 67cb25
  qqracc_state_t * state = (qqracc_state_t *) vstate;
Packit 67cb25
Packit 67cb25
  /* add new element to ring buffer */
Packit 67cb25
  ringbuf_insert(x, state->rbuf);
Packit 67cb25
Packit 67cb25
  return GSL_SUCCESS;
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
static int
Packit 67cb25
qqracc_delete(void * vstate)
Packit 67cb25
{
Packit 67cb25
  qqracc_state_t * state = (qqracc_state_t *) vstate;
Packit 67cb25
Packit 67cb25
  if (!ringbuf_is_empty(state->rbuf))
Packit 67cb25
    ringbuf_pop_back(state->rbuf);
Packit 67cb25
Packit 67cb25
  return GSL_SUCCESS;
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
/* FIXME XXX: this is inefficient - could be improved by maintaining a sorted ring buffer */
Packit 67cb25
static int
Packit 67cb25
qqracc_get(void * params, qqracc_type_t * result, const void * vstate)
Packit 67cb25
{
Packit 67cb25
  const qqracc_state_t * state = (const qqracc_state_t *) vstate;
Packit 67cb25
  double q = *(double *) params;
Packit 67cb25
  size_t n = ringbuf_copy(state->window, state->rbuf);
Packit 67cb25
  double quant1, quant2;
Packit 67cb25
Packit 67cb25
  gsl_sort(state->window, 1, n);
Packit 67cb25
Packit 67cb25
  /* compute q-quantile and (1-q)-quantile */
Packit 67cb25
  quant1 = gsl_stats_quantile_from_sorted_data(state->window, 1, n, q);
Packit 67cb25
  quant2 = gsl_stats_quantile_from_sorted_data(state->window, 1, n, 1.0 - q);
Packit 67cb25
Packit 67cb25
  /* compute q-quantile range */
Packit 67cb25
  *result = quant2 - quant1;
Packit 67cb25
Packit 67cb25
  return GSL_SUCCESS;
Packit 67cb25
}
Packit 67cb25
Packit 67cb25
static const gsl_movstat_accum qqr_accum_type =
Packit 67cb25
{
Packit 67cb25
  qqracc_size,
Packit 67cb25
  qqracc_init,
Packit 67cb25
  qqracc_insert,
Packit 67cb25
  qqracc_delete,
Packit 67cb25
  qqracc_get
Packit 67cb25
};
Packit 67cb25
Packit 67cb25
const gsl_movstat_accum *gsl_movstat_accum_qqr = &qqr_accum_type;