|
Packit |
67cb25 |
/* movstat/madacc.c
|
|
Packit |
67cb25 |
*
|
|
Packit |
67cb25 |
* Copyright (C) 2018 Patrick Alken
|
|
Packit |
67cb25 |
*
|
|
Packit |
67cb25 |
* This program is free software; you can redistribute it and/or modify
|
|
Packit |
67cb25 |
* it under the terms of the GNU General Public License as published by
|
|
Packit |
67cb25 |
* the Free Software Foundation; either version 3 of the License, or (at
|
|
Packit |
67cb25 |
* your option) any later version.
|
|
Packit |
67cb25 |
*
|
|
Packit |
67cb25 |
* This program is distributed in the hope that it will be useful, but
|
|
Packit |
67cb25 |
* WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
Packit |
67cb25 |
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
|
Packit |
67cb25 |
* General Public License for more details.
|
|
Packit |
67cb25 |
*
|
|
Packit |
67cb25 |
* You should have received a copy of the GNU General Public License
|
|
Packit |
67cb25 |
* along with this program; if not, write to the Free Software
|
|
Packit |
67cb25 |
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
|
|
Packit |
67cb25 |
*/
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/*
|
|
Packit |
67cb25 |
* This module contains routines for computing the median absolute deviation (MAD)
|
|
Packit |
67cb25 |
* of a moving fixed-sized window.
|
|
Packit |
67cb25 |
*/
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
#include <config.h>
|
|
Packit |
67cb25 |
#include <stdlib.h>
|
|
Packit |
67cb25 |
#include <math.h>
|
|
Packit |
67cb25 |
#include <gsl/gsl_math.h>
|
|
Packit |
67cb25 |
#include <gsl/gsl_vector.h>
|
|
Packit |
67cb25 |
#include <gsl/gsl_movstat.h>
|
|
Packit |
67cb25 |
#include <gsl/gsl_statistics.h>
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
typedef double madacc_type_t;
|
|
Packit |
67cb25 |
typedef madacc_type_t ringbuf_type_t;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
#include "ringbuf.c"
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
typedef struct
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
size_t n; /* window size */
|
|
Packit |
67cb25 |
const gsl_movstat_accum *medacc; /* median accumulator */
|
|
Packit |
67cb25 |
void *median_state; /* median accumulator workspace */
|
|
Packit |
67cb25 |
ringbuf *rbuf; /* ring buffer storing current window, size n */
|
|
Packit |
67cb25 |
madacc_type_t *work; /* workspace, size n */
|
|
Packit |
67cb25 |
} madacc_state_t;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static size_t madacc_size(const size_t n);
|
|
Packit |
67cb25 |
static int madacc_init(const size_t n, void * vstate);
|
|
Packit |
67cb25 |
static int madacc_insert(const madacc_type_t x, void * vstate);
|
|
Packit |
67cb25 |
static int madacc_delete(void * vstate);
|
|
Packit |
67cb25 |
static int madacc_medmad(void * params, madacc_type_t * result, const void * vstate);
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static size_t
|
|
Packit |
67cb25 |
madacc_size(const size_t n)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
size_t size = 0;
|
|
Packit |
67cb25 |
const gsl_movstat_accum * acc = gsl_movstat_accum_median;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
size += sizeof(madacc_state_t);
|
|
Packit |
67cb25 |
size += (acc->size)(n); /* median accumulator */
|
|
Packit |
67cb25 |
size += ringbuf_size(n); /* rbuf */
|
|
Packit |
67cb25 |
size += n * sizeof(madacc_type_t); /* work */
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
return size;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static int
|
|
Packit |
67cb25 |
madacc_init(const size_t n, void * vstate)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
madacc_state_t * state = (madacc_state_t *) vstate;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
state->n = n;
|
|
Packit |
67cb25 |
state->medacc = gsl_movstat_accum_median;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
state->median_state = (void *) ((unsigned char *) vstate + sizeof(madacc_state_t));
|
|
Packit |
67cb25 |
state->rbuf = (ringbuf *) ((unsigned char *) state->median_state + (state->medacc->size)(n));
|
|
Packit |
67cb25 |
state->work = (madacc_type_t *) ((unsigned char *) state->rbuf + ringbuf_size(n));
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
(state->medacc->init)(n, state->median_state);
|
|
Packit |
67cb25 |
ringbuf_init(n, state->rbuf);
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
return GSL_SUCCESS;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static int
|
|
Packit |
67cb25 |
madacc_insert(const madacc_type_t x, void * vstate)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
madacc_state_t * state = (madacc_state_t *) vstate;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* insert element into median accumulator */
|
|
Packit |
67cb25 |
(state->medacc->insert)(x, state->median_state);
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* insert element into ring buffer */
|
|
Packit |
67cb25 |
ringbuf_insert(x, state->rbuf);
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
return GSL_SUCCESS;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static int
|
|
Packit |
67cb25 |
madacc_delete(void * vstate)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
madacc_state_t * state = (madacc_state_t *) vstate;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
if (!ringbuf_is_empty(state->rbuf))
|
|
Packit |
67cb25 |
ringbuf_pop_back(state->rbuf);
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
return GSL_SUCCESS;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static int
|
|
Packit |
67cb25 |
madacc_medmad(void * params, madacc_type_t * result, const void * vstate)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
const madacc_state_t * state = (const madacc_state_t *) vstate;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
if (ringbuf_is_empty(state->rbuf))
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
GSL_ERROR("no samples yet added to workspace", GSL_EINVAL);
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
else
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
int status;
|
|
Packit |
67cb25 |
const double scale = *(double *) params;
|
|
Packit |
67cb25 |
const int n = ringbuf_n(state->rbuf);
|
|
Packit |
67cb25 |
int i;
|
|
Packit |
67cb25 |
double median, mad;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* compute median of current window */
|
|
Packit |
67cb25 |
status = (state->medacc->get)(NULL, &median, state->median_state);
|
|
Packit |
67cb25 |
if (status)
|
|
Packit |
67cb25 |
return status;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* compute current window absolute deviations from median */
|
|
Packit |
67cb25 |
for (i = 0; i < n; ++i)
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
double xi = state->rbuf->array[(state->rbuf->head + i) % state->rbuf->size];
|
|
Packit |
67cb25 |
state->work[i] = fabs(xi - median);
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
/* compute MAD of current window */
|
|
Packit |
67cb25 |
mad = gsl_stats_median(state->work, 1, n);
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
result[0] = median;
|
|
Packit |
67cb25 |
result[1] = scale * mad;
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
return GSL_SUCCESS;
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
}
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
static const gsl_movstat_accum mad_accum_type =
|
|
Packit |
67cb25 |
{
|
|
Packit |
67cb25 |
madacc_size,
|
|
Packit |
67cb25 |
madacc_init,
|
|
Packit |
67cb25 |
madacc_insert,
|
|
Packit |
67cb25 |
NULL, /*XXX*/
|
|
Packit |
67cb25 |
madacc_medmad
|
|
Packit |
67cb25 |
};
|
|
Packit |
67cb25 |
|
|
Packit |
67cb25 |
const gsl_movstat_accum *gsl_movstat_accum_mad = &mad_accum_type;
|