Blame movstat/madacc.c

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/* movstat/madacc.c
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 *
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 * Copyright (C) 2018 Patrick Alken
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 * 
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 3 of the License, or (at
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 * your option) any later version.
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 * 
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 * This program is distributed in the hope that it will be useful, but
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 * WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
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 * General Public License for more details.
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 * 
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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 */
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/*
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 * This module contains routines for computing the median absolute deviation (MAD)
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 * of a moving fixed-sized window.
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 */
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#include <config.h>
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#include <stdlib.h>
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#include <math.h>
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#include <gsl/gsl_math.h>
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#include <gsl/gsl_vector.h>
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#include <gsl/gsl_movstat.h>
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#include <gsl/gsl_statistics.h>
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typedef double madacc_type_t;
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typedef madacc_type_t ringbuf_type_t;
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#include "ringbuf.c"
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typedef struct
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{
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  size_t n;                        /* window size */
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  const gsl_movstat_accum *medacc; /* median accumulator */
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  void *median_state;              /* median accumulator workspace */
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  ringbuf *rbuf;                   /* ring buffer storing current window, size n */
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  madacc_type_t *work;             /* workspace, size n */
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} madacc_state_t;
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static size_t madacc_size(const size_t n);
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static int madacc_init(const size_t n, void * vstate);
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static int madacc_insert(const madacc_type_t x, void * vstate);
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static int madacc_delete(void * vstate);
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static int madacc_medmad(void * params, madacc_type_t * result, const void * vstate);
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static size_t
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madacc_size(const size_t n)
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{
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  size_t size = 0;
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  const gsl_movstat_accum * acc = gsl_movstat_accum_median;
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  size += sizeof(madacc_state_t);
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  size += (acc->size)(n);            /* median accumulator */
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  size += ringbuf_size(n);           /* rbuf */
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  size += n * sizeof(madacc_type_t); /* work */
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  return size;
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}
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static int
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madacc_init(const size_t n, void * vstate)
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{
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  madacc_state_t * state = (madacc_state_t *) vstate;
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  state->n = n;
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  state->medacc = gsl_movstat_accum_median;
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  state->median_state = (void *) ((unsigned char *) vstate + sizeof(madacc_state_t));
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  state->rbuf = (ringbuf *) ((unsigned char *) state->median_state + (state->medacc->size)(n));
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  state->work = (madacc_type_t *) ((unsigned char *) state->rbuf + ringbuf_size(n));
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  (state->medacc->init)(n, state->median_state);
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  ringbuf_init(n, state->rbuf);
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  return GSL_SUCCESS;
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}
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static int
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madacc_insert(const madacc_type_t x, void * vstate)
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{
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  madacc_state_t * state = (madacc_state_t *) vstate;
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  /* insert element into median accumulator */
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  (state->medacc->insert)(x, state->median_state);
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  /* insert element into ring buffer */
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  ringbuf_insert(x, state->rbuf);
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  return GSL_SUCCESS;
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}
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static int
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madacc_delete(void * vstate)
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{
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  madacc_state_t * state = (madacc_state_t *) vstate;
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  if (!ringbuf_is_empty(state->rbuf))
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    ringbuf_pop_back(state->rbuf);
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  return GSL_SUCCESS;
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}
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static int
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madacc_medmad(void * params, madacc_type_t * result, const void * vstate)
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{
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  const madacc_state_t * state = (const madacc_state_t *) vstate;
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  if (ringbuf_is_empty(state->rbuf))
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    {
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      GSL_ERROR("no samples yet added to workspace", GSL_EINVAL);
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    }
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  else
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    {
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      int status;
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      const double scale = *(double *) params;
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      const int n = ringbuf_n(state->rbuf);
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      int i;
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      double median, mad;
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      /* compute median of current window */
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      status = (state->medacc->get)(NULL, &median, state->median_state);
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      if (status)
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        return status;
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      /* compute current window absolute deviations from median */
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      for (i = 0; i < n; ++i)
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        {
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          double xi = state->rbuf->array[(state->rbuf->head + i) % state->rbuf->size];
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          state->work[i] = fabs(xi - median);
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        }
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      /* compute MAD of current window */
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      mad = gsl_stats_median(state->work, 1, n);
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      result[0] = median;
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      result[1] = scale * mad;
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      return GSL_SUCCESS;
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    }
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}
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static const gsl_movstat_accum mad_accum_type =
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{
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  madacc_size,
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  madacc_init,
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  madacc_insert,
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  NULL, /*XXX*/
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  madacc_medmad
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};
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const gsl_movstat_accum *gsl_movstat_accum_mad = &mad_accum_type;