Blame movstat/alloc.c

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/* movstat/alloc.c
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 *
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 * Copyright (C) 2018 Patrick Alken
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 * 
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 3 of the License, or (at
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 * your option) any later version.
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 * 
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 * This program is distributed in the hope that it will be useful, but
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 * WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
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 * General Public License for more details.
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 * 
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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 */
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#include <config.h>
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#include <stdlib.h>
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#include <gsl/gsl_math.h>
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#include <gsl/gsl_errno.h>
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#include <gsl/gsl_movstat.h>
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/*
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gsl_movstat_alloc()
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  Allocate a workspace for moving window statistics.
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The window around sample x_i is defined as:
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W_i^{H,J} = {x_{i-H},...,x_i,...x_{i+J}}
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The total window size is:
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K = H + J + 1
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Inputs: K - total samples in window (H = J = K / 2)
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Return: pointer to workspace
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Notes:
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1) If K is even, it is rounded up to the next odd
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*/
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gsl_movstat_workspace *
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gsl_movstat_alloc(const size_t K)
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{
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  const size_t H = K / 2;
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  return gsl_movstat_alloc_with_size(0, H, H);
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}
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/*
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gsl_movstat_alloc2()
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  Allocate a workspace for moving window statistics.
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The window around sample x_i is defined as:
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W_i^{H,J} = {x_{i-H},...,x_i,...x_{i+J}}
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The total window size is:
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K = H + J + 1
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Inputs: H - number of samples before current sample
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        J - number of samples after current sample
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Return: pointer to workspace
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*/
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gsl_movstat_workspace *
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gsl_movstat_alloc2(const size_t H, const size_t J)
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{
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  return gsl_movstat_alloc_with_size(0, H, J);
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}
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/*
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gsl_movstat_alloc_with_size()
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  Allocate a workspace for moving window statistics with predefined workspace
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size for accumulators. The window around sample x_i is defined as:
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W_i^{H,J} = {x_{i-H},...,x_i,...x_{i+J}}
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The total window size is:
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K = H + J + 1
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Inputs: accum_state_size - state size for accumulator (set to zero to use default value)
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        H                - number of samples before current sample
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        J                - number of samples after current sample
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Return: pointer to workspace
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*/
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gsl_movstat_workspace *
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gsl_movstat_alloc_with_size(const size_t accum_state_size, const size_t H, const size_t J)
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{
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  gsl_movstat_workspace *w;
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  size_t state_size = accum_state_size;
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  w = calloc(1, sizeof(gsl_movstat_workspace));
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  if (w == 0)
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    {
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      GSL_ERROR_NULL ("failed to allocate space for workspace", GSL_ENOMEM);
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    }
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  w->H = H;
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  w->J = J;
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  w->K = H + J + 1;
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  if (state_size == 0)
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    {
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      /*
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       * determine maximum number of bytes needed for the various accumulators;
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       * the accumulators will all share the same workspace
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       */
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      state_size = GSL_MAX(state_size, (gsl_movstat_accum_mad->size)(w->K));    /* MAD accumulator */
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      state_size = GSL_MAX(state_size, (gsl_movstat_accum_mean->size)(w->K));   /* mean/variance/sd accumulator */
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      state_size = GSL_MAX(state_size, (gsl_movstat_accum_min->size)(w->K));    /* min/max accumulator */
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      state_size = GSL_MAX(state_size, (gsl_movstat_accum_sum->size)(w->K));    /* sum accumulator */
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      state_size = GSL_MAX(state_size, (gsl_movstat_accum_median->size)(w->K)); /* median accumulator */
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      state_size = GSL_MAX(state_size, (gsl_movstat_accum_Qn->size)(w->K));     /* Q_n accumulator */
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      state_size = GSL_MAX(state_size, (gsl_movstat_accum_qqr->size)(w->K));    /* QQR accumulator */
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      state_size = GSL_MAX(state_size, (gsl_movstat_accum_Sn->size)(w->K));     /* S_n accumulator */
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    }
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  w->state = malloc(state_size);
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  if (w->state == 0)
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    {
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      gsl_movstat_free(w);
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      GSL_ERROR_NULL ("failed to allocate space for accumulator state", GSL_ENOMEM);
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    }
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  w->work = malloc(w->K * sizeof(double));
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  if (w->work == 0)
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    {
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      gsl_movstat_free(w);
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      GSL_ERROR_NULL ("failed to allocate space for work", GSL_ENOMEM);
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    }
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  w->state_size = state_size;
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  return w;
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}
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void
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gsl_movstat_free(gsl_movstat_workspace * w)
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{
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  if (w->work)
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    free(w->work);
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  if (w->state)
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    free(w->state);
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  free(w);
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}